Host Protein General Information (ID: PT0563)
  Protein Name
Immunoglobulin kappa variable 1-33 (EIF6)
  Gene Name
IGKV1-33
  Host Species
Homo sapiens
  Uniprot Entry Name
KV133_HUMAN
  Subcellular Location
Secreted Cell membrane
  External Link
Uniprot ID
P01594
Ensembl ID
ENSG00000242372
HGNC ID
HGNC:5737
  Function in Host
V region of the variable domain of immunoglobulin lightchains that participates in the antigen recognition. Immunoglobulins, also known as antibodies, are membrane-bound orsecreted glycoproteins produced by B lymphocytes. In the recognitionphase of humoral immunity, the membrane-bound immunoglobulins serve asreceptors which, upon binding of a specific antigen, trigger the clonalexpansion and differentiation of B lymphocytes into immunoglobulins-secreting plasma cells. Secreted immunoglobulins mediate the effectorphase of humoral immunity, which results in the elimination of boundantigens. The antigen binding siteis formed by the variable domain of one heavy chain, together with thatof its associated light chain. Thus, each immunoglobulin has twoantigen binding sites with remarkable affinity for a particularantigen. The variable domains are assembled by a process called V- (D) -Jrearrangement and can then be subjected to somatic hypermutationswhich, after exposure to antigen and selection, allow affinitymaturation for a particular antigen. [1-4]
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  3D Structure

 Full List of Virus RNA Interacting with This Protien
            RNA Region: 3'-UTR (hCoV-19/IPBCAMS-YL01/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [5]
              Strains Name
hCoV-19/IPBCAMS-YL01/2020
              Strains Family
Beta (B.1.351)
              RNA Binding Region
3'-UTR
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Interaction Type Unlikely to be direct binder
              Infection Cells Huh7.5.1 cells (Hepatocyte derived cellular carcinoma cell)  (CVCL_E049 )
              Cell Originated Tissue Liver
              Infection Time 30 h
              Interaction Score MIST = 0.685519943
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Sequence Information
MDMRVPAQLLGLLLLWLSGARCDIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLP
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References
1 Immunoglobulin and T Cell Receptor Genes: IMGT(? and the Birth and Rise of Immunoinformatics. Front Immunol. 2014 Feb 5;5:22.
2 Molecular programming of B cell memory. Nat Rev Immunol. 2011 Dec 9;12(1):24-34.
3 Structure and function of immunoglobulins. J Allergy Clin Immunol. 2010 Feb;125(2 Suppl 2):S41-52.
4 Immunoglobulin somatic hypermutation. Annu Rev Genet. 2007;41:107-20.
5 Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2. Cell Res. 2022 Jan;32(1):9-23.