Host Protein General Information (ID: PT0188)
  Protein Name
Apolipoprotein E (APOE)
  Gene Name
APOE
  Host Species
Homo sapiens
  Uniprot Entry Name
APOE_HUMAN
  Protein Families
Apolipoprotein A1/A4/E family
  Subcellular Location
Extracellular space Secreted; Extracellular space
  External Link
NCBI Gene ID
348
Uniprot ID
P02649
Ensembl ID
ENSG00000130203
HGNC ID
HGNC:613
  Function in Host
APOE is an apolipoprotein, a protein associating with lipidparticles, that mainly functions in lipoprotein-mediated lipidtransport between organs via the plasma and interstitial fluids. APOE is a corecomponent of plasma lipoproteins and is involved in their production, conversion and clearance. Apoliproteins are amphipathic molecules that interactboth with lipids of the lipoprotein particle core and the aqueousenvironment of the plasma. As such, APOE associates with chylomicrons, chylomicron remnants, very low density lipoproteins (VLDL) andintermediate density lipoproteins (IDL) but shows a preferentialbinding to high-density lipoproteins (HDL). It also binds a wide range of cellular receptorsincluding the LDL receptor/LDLR, the LDL receptor-related proteinsLRP1, LRP2 and LRP8 and the very low-density lipoprotein receptor/VLDLRthat mediate the cellular uptake of the APOE-containing lipoproteinparticles. Finally, APOE has also a heparin-binding activity and binds heparan-sulfate proteoglycans on the surface of cells, a property that supportsthe capture and the receptor-mediated uptake of APOE-containinglipoproteins by cells. A main function of APOE is to mediate lipoproteinclearance through the uptake of chylomicrons, VLDLs, and HDLs byhepatocytes. APOE is also involved in thebiosynthesis by the liver of VLDLs as well as their uptake byperipheral tissues ensuring the delivery of triglycerides and energystorage in muscle, heart and adipose tissues. By participating in the lipoprotein-mediateddistribution of lipids among tissues, APOE plays a critical role inplasma and tissues lipid homeostasis. APOE is also involved in two steps of reversecholesterol transport, the HDLs-mediated transport of cholesterol fromperipheral tissues to the liver, and thereby plays an important role incholesterol homeostasis. First, it is functionally associated with ABCA1 inthe biogenesis of HDLs in tissues. Second, it is enriched in circulating HDLs and mediates their uptake byhepatocytes. APOE also plays an important role inlipid transport in the central nervous system, regulating neuronsurvival and sprouting. APOE is alsoinvolved in innate and adaptive immune responses, controlling forinstance the survival of myeloid-derived suppressor cells. Binds to the immune cell receptor LILRB4. APOE may also play a role in transcriptionregulation through a receptor-dependent and cholesterol-independentmechanism, that activates MAP3K12 and a non-canonical MAPK signaltransduction pathway that results in enhanced AP-1-mediatedtranscription of APP. [1-7]
    Click to Show/Hide
  Related KEGG Pathway
Cholesterol metabolism hsa04979            Pathway Map 
Alzheimer disease hsa05010            Pathway Map 
  3D Structure

 Full List of Virus RNA Interacting with This Protien
            RNA Region: Not Specified Virus Region (hCoV-19/Not Specified Virus Strain )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [8]
              Strains Name
hCoV-19/Not Specified Virus Strain
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7 cells (liver carcinoma cell)  (CVCL_0336 )
              Cell Originated Tissue Liver
              Infection Time 24h
              Interaction Score log2FC = 1.93622E+14
              Method Description RNA antisense purification and quantitative mass spectrometry (RAP-MS); Tandem mass tag (TMT) labelling; liquid chromatography tandem mass spectrometry (LC-MS/MS); Westernblot

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
Picture Not Found

GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
Picture Not Found

GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
Picture Not Found

Protein Sequence Information
MKVLWAALLVTFLAGCQAKVEQAVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLKSWFEPLVEDMQRQWAGLVEKVQAAVGTSAAPVPSDNH
    Click to Show/Hide

References
1 ApoE influences amyloid-B (AB) clearance despite minimal apoE/AB association in physiological conditions. Proc Natl Acad Sci USA. 2013 May 7;110(19):E1807-16.
2 Molecular interactions between apoE and ABCA1: impact on apoE lipidation. J Lipid Res. 2004 May;45(5):839-48.
3 Heparan sulfate proteoglycans participate in hepatic lipaseand apolipoprotein E-mediated binding and uptake of plasma lipoproteins, including high density lipoproteins. J Biol Chem. 1997 Dec 12;272(50):31285-92.
4 Mechanisms of inhibition by apolipoprotein C of apolipoprotein E-dependent cellular metabolism of human triglyceride-rich lipoproteins through the low density lipoprotein receptor pathway. J Biol Chem. 1991 Sep 25;266(27):18259-67.
5 Effects of exogenous apo E-3 and of cholesterol-enriched meals on the cellular metabolism of human chylomicrons and their remnants. Biochim Biophys Acta. 1991 Oct 1;1085(3):336-42.
6 Low density lipoprotein receptor-related protein mediates uptake of cholesteryl esters derived from apoprotein E-enriched lipoproteins. Proc Natl Acad Sci USA. 1989 Aug;86(15):5810-4.
7 Cholesteryl ester and apolipoprotein E transfer between human high density lipoproteins and chylomicrons. Biochim Biophys Acta. 1983 Feb 7;750(2):411-7.
8 The SARS-CoV-2 RNA-protein interactome in infected human cells. Nat Microbiol. 2021 Mar;6(3):339-353.