Details of Host Protein
Host Protein General Information (ID: PT0200) | |||||||||
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Protein Name |
ATP synthase subunit gamma (ATP5C)
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Gene Name |
ATP5F1C
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Host Species |
Homo sapiens
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Uniprot Entry Name |
ATPG_HUMAN
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Protein Families |
ATPase gamma chain family
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Subcellular Location |
Mitochondrion
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External Link | |||||||||
NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Mitochondrial membrane ATP synthase (F (1) F (0) ATP synthase orComplex V) produces ATP from ADP in the presence of a proton gradientacross the membrane which is generated by electron transport complexesof the respiratory chain. F-type ATPases consist of two structuraldomains, F (1) - containing the extramembraneous catalytic core, andF (0) - containing the membrane proton channel, linked together by acentral stalk and a peripheral stalk. During catalysis, ATP synthesisin the catalytic domain of F (1) is coupled via a rotary mechanism ofthe central stalk subunits to proton translocation. Part of the complexF (1) domain and the central stalk which is part of the complex rotaryelement. The gamma subunit protrudes into the catalytic domain formedof alpha (3) beta (3). Rotation of the central stalk against thesurrounding alpha (3) beta (3) subunits leads to hydrolysis of ATP inthree separate catalytic sites on the beta subunits.
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Related KEGG Pathway | |||||||||
Chemical carcinogenesis - reactive oxygen species | hsa05208 |
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Diabetic cardiomyopathy | hsa05415 |
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Oxidative phosphorylation | hsa00190 |
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Thermogenesis | hsa04714 |
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Metabolic pathways | hsa01100 |
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Alzheimer disease | hsa05010 |
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Parkinson disease | hsa05012 |
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Amyotrophic lateral sclerosis | hsa05014 |
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Huntington disease | hsa05016 |
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3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [1] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein ATP5F1C in viral infection, ATP5F1C protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of ATP5F1C increases SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: ORF10 (hCoV-19/Not Specified Virus Strain ) | |||||||||
RNA Region Details |
RNA Info
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[2] | |||||||
Strains Name |
hCoV-19/Not Specified Virus Strain
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RNA Binding Region |
ORF10
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Huh7 cells (human liver cell line) (CVCL_0336 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Interaction Score | P-value < 0.05 | ||||||||
Method Description | RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS) |