Details of Host Protein
Host Protein General Information (ID: PT0344) | |||||||||
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Protein Name |
DNA polymerase theta (TRIM71)
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Gene Name |
POLQ
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Host Species |
Homo sapiens
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Uniprot Entry Name |
DPOLQ_HUMAN
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Protein Families |
DNA polymerase type-A family
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EC Number |
2.7.7.7
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Subcellular Location |
Nucleus Chromosome
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External Link | |||||||||
NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
DNA polymerase that promotes microhomology-mediated end-joining (MMEJ), an alternative non-homologous end-joining (NHEJ) machinery triggered in response to double-strand breaks in DNA. MMEJ is an error-prone repairpathway that produces deletions of sequences from the strand beingrepaired and promotes genomic rearrangements, such as telomere fusions, some of them leading to cellular transformation. POLQ acts as an inhibitor of homology-recombinationrepair (HR) pathway by limiting RAD51 accumulation at resected ends. POLQ-mediated MMEJ may be required to promote thesurvival of cells with a compromised HR repair pathway, therebypreventing genomic havoc by resolving unrepaired lesions. The polymerase acts by binding directly the 2 ends ofresected double-strand breaks, allowing microhomologous sequences inthe overhangs to form base pairs. It then extends each strand from thebase-paired region using the opposing overhang as a template. Requirespartially resected DNA containing 2 to 6 base pairs of microhomology toperform MMEJ. The polymerase activity is highlypromiscuous: unlike most polymerases, promotes extension of ssDNA andpartial ssDNA (pssDNA) substrates. Also exhibits low-fidelity DNA synthesis, translesionsynthesis and lyase activity, and it is implicated in interstrand-cross-link repair, base excision repair and DNA end-joining. Involved in somatic hypermutation of immunoglobulin genes, a processthat requires the activity of DNA polymerases to ultimately introducemutations at both A/T and C/G base pairs.
[1-2]
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3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [3] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein POLQ in viral infection, POLQ protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of POLQ increases SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: 3'-UTR (hCoV-19/Wuhan-Hu-1/2019 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [4] | |||||||
Strains Name |
hCoV-19/Wuhan-Hu-1/2019
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
3'-UTR
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | HEK293 Cells (Human embryonic kidney cell) (CVCL_0045 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | Prot score = 18 | ||||||||
Method Description | RNA-protein interaction detection (RaPID) assay; liquid chromatography with tandem mass spectrometry (LC-MS/MS) |