Details of Host Protein
Host Protein General Information (ID: PT0349) | |||||||||
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Protein Name |
AP endonuclease 1 (APEX1)
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Gene Name |
APEX1
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Host Species |
Homo sapiens
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Uniprot Entry Name |
APEX1_HUMAN
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Protein Families |
DNA repair enzymes AP/ExoA family
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EC Number |
3.1.-.-
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Subcellular Location |
Nucleus
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External Link | |||||||||
NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
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Function in Host |
Multifunctional protein that plays a central role in thecellular response to oxidative stress. The two major activities ofAPEX1 are DNA repair and redox regulation of transcriptional factors. Functions as a apurinic/apyrimidinic (AP) endodeoxyribonuclease in theDNA base excision repair (BER) pathway of DNA lesions induced byoxidative and alkylating agents. Initiates repair of AP sites in DNA bycatalyzing hydrolytic incision of the phosphodiester backboneimmediately adjacent to the damage, generating a single-strand breakwith 5'-deoxyribose phosphate and 3'-hydroxyl ends. Does also incise atAP sites in the DNA strand of DNA/RNA hybrids, single-stranded DNAregions of R-loop structures, and single-stranded RNA molecules. Has a3'-5' exoribonuclease activity on mismatched deoxyribonucleotides atthe 3' termini of nicked or gapped DNA molecules during short-patchBER. Possesses a DNA 3' phosphodiesterase activity capable of removinglesions (such as phosphoglycolate) blocking the 3' side of DNA strandbreaks. May also play a role in the epigenetic regulation of geneexpression by participating in DNA demethylation. Acts as a loadingfactor for POLB onto non-incised AP sites in DNA and stimulates the 5'-terminal deoxyribose 5'-phosphate (dRp) excision activity of POLB. Plays a role in the protection from granzymes-mediated cellular repairleading to cell death. Also involved in the DNA cleavage step of classswitch recombination (CSR). On the other hand, APEX1 also exertsreversible nuclear redox activity to regulate DNA binding affinity andtranscriptional activity of transcriptional factors by controlling theredox status of their DNA-binding domain, such as the FOS/JUN AP-1complex after exposure to IR. Involved in calcium-dependent down-regulation of parathyroid hormone (PTH) expression by binding tonegative calcium response elements (nCaREs). Together with HNRNPL orthe dimer XRCC5/XRCC6, associates with nCaRE, acting as an activator oftranscriptional repression. Stimulates the YBX1-mediated MDR1 promoteractivity, when acetylated at Lys-6 and Lys-7, leading to drugresistance. Acts also as an endoribonuclease involved in the control ofsingle-stranded RNA metabolism. Plays a role in regulating MYC mRNAturnover by preferentially cleaving in between UA and CA dinucleotidesof the MYC coding region determinant (CRD). In association with NMD1, plays a role in the rRNA quality control process during cell cycleprogression. Associates, together with YBX1, on the MDR1 promoter. Together with NPM1, associates with rRNA. Binds DNA and RNA.
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Related KEGG Pathway | |||||||||
Base excision repair | hsa03410 |
Pathway Map ![]() |
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3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [26] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein APEX1 in viral infection, APEX1 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of APEX1 increases SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 ) | |||||||||
RNA Region Details |
RNA Info
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[27] | |||||||
Strains Name |
hCoV-19/USA/WA1/2020
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Strains Family |
Alpha (B.1.1.7)
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Huh7.5 cells (Hepatocyte derived cellular carcinoma cell) (CVCL_7927 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | FDR ≤ 0.05 | ||||||||
Method Description | comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Potential Drug(s) that Targets This Protein | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Drug Name | DrunkBank ID | Pubchem ID | TTD ID | REF | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Iucanthone | DB04967 | 10180 | D09OZC | [27] |
Protein Sequence Information |
MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL
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