Details of Host Protein
| Host Protein General Information (ID: PT0423) | |||||||||
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| Protein Name |
Eukaryotic translation initiation factor 6 (DDOST)
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Gene Name |
EIF6
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| Host Species |
Homo sapiens
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Uniprot Entry Name |
IF6_HUMAN
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| Protein Families |
EIF-6 family
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| Subcellular Location |
Cytoplasm
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| External Link | |||||||||
| NCBI Gene ID | |||||||||
| Uniprot ID | |||||||||
| Ensembl ID | |||||||||
| HGNC ID | |||||||||
| Function in Host |
Binds to the 60S ribosomal subunit and prevents itsassociation with the 40S ribosomal subunit to form the 80S initiationcomplex in the cytoplasm. Behaves as a stimulatory translationinitiation factor downstream insulin/growth factors. Is also involvedin ribosome biogenesis. Associates with pre-60S subunits in the nucleusand is involved in its nuclear export. Cytoplasmic release of TIF6 from60S subunits and nuclear relocalization is promoted by a RACK1 (RACK1) -dependent protein kinase C activity. In tissues responsive to insulin, controls fatty acidsynthesis and glycolysis by exerting translational control ofadipogenic transcription factors such as CEBPB, CEBPD and ATF4 thathave G/C rich or uORF in their 5'UTR. Required for ROS-dependentmegakaryocyte maturation and platelets formation, controls theexpression of mitochondrial respiratory chain genes involved inreactive oxygen species (ROS) synthesis. Involved inmiRNA-mediated gene silencing by the RNA-induced silencing complex (RISC). Required for both miRNA-mediated translational repression andmiRNA-mediated cleavage of complementary mRNAs by RISC. Modulates cell cycle progression and globaltranslation of pre-B cells, its activation seems to be rate-limiting intumorigenesis and tumor growth.
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| Related KEGG Pathway | |||||||||
| Ribosome biogenesis in eukaryotes | hsa03008 |
Pathway Map
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| 3D Structure |
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| Function of This Protein During Virus Infection | |||||||||
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| Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [5] | |||||
| Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
| Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
| Method Description | To detect the role of host protein EIF6 in viral infection, EIF6 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
| Results | It is reported that knockout of EIF6 increases SARS-CoV-2 RNA levels compared with control group. | ||||||||
| Full List of Virus RNA Interacting with This Protien | |||||||||
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| RNA Region: ORF10 (hCoV-19/Not Specified Virus Strain ) | |||||||||
| RNA Region Details |
RNA Info
Click to show the detail information of this RNA binding region
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[6] | |||||||
| Strains Name |
hCoV-19/Not Specified Virus Strain
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| RNA Binding Region |
ORF10
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| Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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| Infection Cells | Huh7 cells (human liver cell line) (CVCL_0336 ) | ||||||||
| Cell Originated Tissue | Liver | ||||||||
| Interaction Score | P-value < 0.05 | ||||||||
| Method Description | RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS) | ||||||||




