Host Protein General Information (ID: PT0463)
  Protein Name
Gamma-interferon-inducible protein 16 (IFI16)
  Gene Name
IFI16
  Host Species
Homo sapiens
  Uniprot Entry Name
IF16_HUMAN
  Protein Families
HIN-2.. family
  Subcellular Location
Nucleus
  External Link
NCBI Gene ID
3428
Uniprot ID
Q16666
Ensembl ID
ENSG00000163565
HGNC ID
HGNC:5395
  Function in Host
Binds double-stranded DNA. Binds preferentially tosupercoiled DNA and cruciform DNA structures. Seems to be involved intranscriptional regulation. May function as a transcriptionalrepressor. Could have a role in the regulation of hematopoieticdifferentiation through activation of unknown target genes. Controlscellular proliferation by modulating the functions of cell cycleregulatory factors including p53/TP53 and the retinoblastoma protein. May be involved in TP53-mediated transcriptional activation byenhancing TP53 sequence-specific DNA binding and modulating TP53phosphorylation status. Seems to be involved in energy-level-dependentactivation of the ATM/ AMPK/TP53 pathway coupled to regulation ofautophagy. May be involved in regulation of TP53-mediated cell deathalso involving BRCA1. May be involved in the senescence of prostateepithelial cells. Involved in innate immune response by recognizingviral dsDNA in the cytosol and probably in the nucleus. After bindingto viral DNA in the cytoplasm recruits TMEM173/STING and mediates theinduction of IFN-beta. Has anti-inflammatory activity and inhibits theactivation of the AIM2 inflammasome, probably via association withAIM2. Proposed to bind viral DNA in the nucleus, such as of Kaposi'ssarcoma-associated herpesvirus, and to induce the formation of nuclearcaspase-1-activating inflammasome formation via association withPYCARD. Inhibits replication of herpesviruses such as humancytomegalovirus (HCMV) probably by interfering with promoterrecruitment of members of the Sp1 family of transcription factors. Necessary to activate the IRF3 signaling cascade during human herpessimplex virus 1 (HHV-1) infection and promotes the assembly ofheterochromatin on herpesviral DNA and inhibition of viral immediate-early gene expression and replication. Involved in the MTA1-mediatedepigenetic regulation of ESR1 expression in breast cancer. [1-12]
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  Related KEGG Pathway
NOD-like receptor signaling pathway hsa04621            Pathway Map 
  3D Structure

Function of This Protein During Virus Infection
Virus NameSARS-COV-2 Protein Function Pro-viral [13]
Infected TissueLung Infection Time7-9 Days
Infected CellCalu-3 Cells (Human epithelial cell line) Cellosaurus IDCVCL_0609 
Method DescriptionTo detect the role of host protein IFI16 in viral infection, IFI16 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen.
ResultsIt is reported that knockout of IFI16 leads to the decreased SARS-CoV-2 RNA levels compared with control group.

 Full List of Virus RNA Interacting with This Protien
            RNA Region: ORF10 (hCoV-19/Not Specified Virus Strain )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [14]
              Strains Name
hCoV-19/Not Specified Virus Strain
              RNA Binding Region
ORF10
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Calu-3 cells (Human Lung Cancer Cell)  (CVCL_0609 )
              Cell Originated Tissue Liver
              Interaction Score P-value < 0.05
              Method Description RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Phosphorylation after Virus Infection
S106 [15]
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S153 [16]
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T105 [16]
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Protein Sequence Information
MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDAGLGKLIKIFEDIPTLEDLAETLKKEKLKVKGPALSRKRKKEVDATSPAPSTSSTVKTEGAEATPGAQKRKKSTKEKAGPKGSKVSEEQTQPPSPAGAGMSTAMGRSPSPKTSLSAPPNSSSTENPKTVAKCQVTPRRNVLQKRPVIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTVNQKTTIYEIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRLRKKNQMSKLISEMHSFIQIKKKTNPRNNDPKSMKLPQEQRQLPYPSEASTTFPESHLRTPQMPPTTPSSSFFTKKSEDTISKMNDFMRMQILKEGSHFPGPFMTSIGPAESHPHTPQMPPSTPSSSFLTTKSEDTISKMNDFMRMQILKEGSHFPGPFMTSIGPAESHPHTPQMPPSTPSSSFLTTLKPRLKTEPEEVSIEDSAQSDLKEVMVLNATESFVYEPKEQKKMFHATVATENEVFRVKVFNIDLKEKFTPKKIIAIANYVCRNGFLEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCSQTKGSFVNGVFEVHKKNVRGEFTYYEIQDNTGKMEVVVHGRLTTINCEEGDKLKLTCFELAPKSGNTGELRSVIHSHIKVIKTRKNKKDILNPDSSMETSPDFFF
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References
1 Differential regulation of estrogen receptor expression in breast cancer cells by metastasis-associated protein 1. Cancer Res. 2014 Mar 1;74(5):1484-94.
2 Nuclear interferon-inducible protein 16 promotes silencing of herpesviral and transfected DNA. Proc Natl Acad Sci USA. 2013 Nov 19;110(47):E4492-501.
3 Nuclear IFI16 induction of IRF-3 signaling during herpesviral infection and degradation of IFI16 by the viral ICP0 protein. Proc Natl Acad Sci USA. 2012 Oct 30;109(44):E3008-17.
4 The intracellular DNA sensor IFI16 gene acts as restriction factor for human cytomegalovirus replication. PLoS Pathog. 2012 Jan;8(1):e1002498.
5 IFI16 protein mediates the anti-inflammatory actions of the type-I interferons through suppression of activation of caspase-1 by inflammasomes. PLoS One. 2011;6(10):e27040.
6 IFI16 induction by glucose restriction in human fibroblasts contributes to autophagy through activation of the ATM/AMPK/p53 pathway. PLoS One. 2011 May 5;6(5):e19532.
7 IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to Kaposi Sarcoma-associated herpesvirus infection. Cell Host Microbe. 2011 May 19;9(5):363-75.
8 IFI16 is an innate immune sensor for intracellular DNA. Nat Immunol. 2010 Nov;11(11):997-1004.
9 Role of IFI 16, a member of the interferon-inducible p200-protein family, in prostate epithelial cellular senescence. Oncogene. 2003 Jul 31;22(31):4831-40.
10 A member of the Pyrin family, IFI16, is a novel BRCA1-associated protein involved in the p53-mediated apoptosis pathway. Oncogene. 2003 Dec 4;22(55):8931-8.
11 Functional interaction between p53 and the interferon-inducible nucleoprotein IFI 16. Oncogene. 2000 Dec 7;19(52):6033-42.
12 The human interferon-inducible protein, IFI 16, is a repressor of transcription. J Biol Chem. 1998 Jul 3;273(27):17172-7.
13 Genome-wide CRISPR screens identify GATA6 as a proviral host factor for SARS-CoV-2 via modulation of ACE2. Nat Commun. 2022 Apr 25;13(1):2237.
14 Mapping the host protein interactome of non-coding regions in SARS-CoV-2 genome. bioRxiv. 2021 Jun; DOI:10.1101/2021.06.19.449092.
15 The Global Phosphorylation Landscape of SARS-CoV-2 Infection. Cell. 2020 Aug 6;182(3):685-712.e19.
16 Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. Nature. 2021 Jun;594(7862):246-252.