Host Protein General Information (ID: PT0492)
  Protein Name
GTP-binding nuclear protein Ran (RAN)
  Gene Name
RAN
  Host Species
Homo sapiens
  Uniprot Entry Name
RAN_HUMAN
  Protein Families
Small GTPase superfamily
  Subcellular Location
Nucleus; cytoplasm and cytosol
  External Link
NCBI Gene ID
5901
Uniprot ID
P62826
Ensembl ID
ENSG00000132341
HGNC ID
HGNC:9846
  Function in Host
GTPase involved in nucleocytoplasmic transport, participatingboth to the import and the export from the nucleus of proteins and RNAs. Switches between acytoplasmic GDP- and a nuclear GTP-bound state by nucleotide exchangeand GTP hydrolysis. Nuclear importreceptors such as importin beta bind their substrates only in theabsence of GTP-bound RAN and release them upon direct interaction withGTP-bound RAN, while export receptors behave in the opposite way. Thereby, RAN controls cargo loading and release by transport receptorsin the proper compartment and ensures the directionality of thetransport. Interactionwith RANBP1 induces a conformation change in the complex formed by XPO1and RAN that triggers the release of the nuclear export signal of cargoproteins. RAN (GTP-bound form) triggers microtubuleassembly at mitotic chromosomes and is required for normal mitoticspindle assembly and chromosome segregation. Required for normal progress through mitosis. The complex withBIRC5/survivin plays a role in mitotic spindle formation by serving asa physical scaffold to help deliver the RAN effector molecule TPX2 tomicrotubules. Acts as a negative regulator of thekinase activity of VRK1 and VRK2. Enhances AR-mediated transactivation. Transactivation decreases as the poly-Glnlength within AR increases. [1-11]
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  Related KEGG Pathway
Human T-cell leukemia virus 1 infection hsa05166            Pathway Map 
Viral life cycle - HIV-1 hsa03250            Pathway Map 
Ribosome biogenesis in eukaryotes hsa03008            Pathway Map 
Nucleocytoplasmic transport hsa03013            Pathway Map 
  3D Structure

Host Protein - Virus RNA Network

 Full List of Virus RNA Interacting with This Protien
            RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [12]
              Strains Name
hCoV-19/USA/WA1/2020
              Strains Family
Alpha (B.1.1.7)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7.5 cells (Hepatocyte derived cellular carcinoma cell)  (CVCL_7927 )
              Cell Originated Tissue Liver
              Infection Time 48 h
              Interaction Score FDR ≤ 0.05
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)
           RNA Region: Not Specified Virus Region (hCoV-19/France/IDF-220-95/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [13]
              Strains Name
hCoV-19/France/IDF-220-95/2020
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Interaction Type Direct interaction
              Infection Cells HEK293 Cells (Human embryonic kidney cell) HEK293 Cells (Human embryonic kidney cell)  (CVCL_0045 )
              Cell Originated Tissue Kidney
              Infection Time 48 h
              Interaction Score SAINT score ≥ 0.79
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Phosphorylation after Virus Infection
S135 [14]
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Protein Sequence Information
MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL
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References
1 Mitosis-specific acetylation tunes Ran effector binding for chromosome segregation. J Mol Cell Biol. 2018 Feb 1;10(1):18-32.
2 Catalysis of GTP hydrolysis by small GTPases at atomic detail by integration of X-ray crystallography, experimental, and theoretical IR spectroscopy. J Biol Chem. 2015 Oct 2;290(40):24079-90.
3 An allosteric mechanism to displace nuclear export cargo from CRM1 and RanGTP by RanBP1. EMBO J. 2010 Jun 16;29(12):2002-13.
4 Structural basis for guanine nucleotide exchange on Ran by the regulator of chromosome condensation (RCC1). Cell. 2001 Apr 20;105(2):245-55.
5 NTF2 mediates nuclear import of Ran. EMBO J. 1998 Nov 16;17(22):6587-98.
6 The asymmetric distribution of the constituents of the Ran system is essential for transport into and out of the nucleus. EMBO J. 1997 Nov 3;16(21):6535-47.
7 RanBP1 is crucial for the release of RanGTP from importin beta-related nuclear transport factors. FEBS Lett. 1997 Dec 15;419(2-3):249-54.
8 Identification of different roles for RanGDP and RanGTP in nuclear protein import. EMBO J. 1996 Oct 15;15(20):5584-94.
9 RAN/TC4 mutants identify a common requirement for snRNP and protein import into the nucleus. J Cell Biol. 1996 May;133(3):485-94.
10 Nuclear protein import: Ran-GTP dissociates the karyopherin alphabeta heterodimer by displacing alpha from an overlapping binding site on beta. Proc Natl Acad Sci USA. 1996 Jul 9;93(14):7059-62.
11 Interaction of the nuclear GTP-binding protein Ran with its regulatory proteins RCC1 and RanGAP1. Biochemistry. 1995 Jan 17;34(2):639-47.
12 Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions. Cell. 2021 Apr 29;184(9):2394-2411.e16.
13 Characterization and functional interrogation of the SARS-CoV-2 RNA interactome. Cell Rep. 2022 Apr 26;39(4):110744.
14 The Global Phosphorylation Landscape of SARS-CoV-2 Infection. Cell. 2020 Aug 6;182(3):685-712.e19.