Details of Host Protein
Host Protein General Information (ID: PT0504) | |||||||||
---|---|---|---|---|---|---|---|---|---|
Protein Name |
Heat shock 70 kDa protein 6 (HSPA6)
|
Gene Name |
HSPA6
|
||||||
Host Species |
Homo sapiens
|
Uniprot Entry Name |
HSP76_HUMAN
|
||||||
Protein Families |
Heat shock protein 7. family
|
||||||||
External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Molecular chaperone implicated in a wide variety of cellularprocesses, including protection of the proteome from stress, foldingand transport of newly synthesized polypeptides, activation ofproteolysis of misfolded proteins and the formation and dissociation ofprotein complexes. Plays a pivotal role in the protein quality controlsystem, ensuring the correct folding of proteins, the re-folding ofmisfolded proteins and controlling the targeting of proteins forsubsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis and ADP release, mediated by co-chaperones. The affinityfor polypeptides is regulated by its nucleotide bound state. In theATP-bound form, it has a low affinity for substrate proteins. However, upon hydrolysis of the ATP to ADP, it undergoes a conformational changethat increases its affinity for substrate proteins. It goes throughrepeated cycles of ATP hydrolysis and nucleotide exchange, whichpermits cycles of substrate binding and release.
Click to Show/Hide
|
||||||||
Related KEGG Pathway | |||||||||
Antigen processing and presentation | hsa04612 | Pathway Map | |||||||
Measles | hsa05162 | Pathway Map | |||||||
Legionellosis | hsa05134 | Pathway Map | |||||||
Toxoplasmosis | hsa05145 | Pathway Map | |||||||
Protein processing in endoplasmic reticulum | hsa04141 | Pathway Map | |||||||
Spliceosome | hsa03040 | Pathway Map | |||||||
MAPK signaling pathway | hsa04010 | Pathway Map | |||||||
Endocytosis | hsa04144 | Pathway Map | |||||||
3D Structure |
|
Function of This Protein During Virus Infection | |||||||||
---|---|---|---|---|---|---|---|---|---|
Virus Name | SARS-COV-2 | Protein Function | Pro-viral | [1] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein HSPA6 in viral infection, HSPA6 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of HSPA6 leads to the decreased SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
---|---|---|---|---|---|---|---|---|---|
RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [2] | |||||||
Strains Name |
hCoV-19/England/02/2020
|
||||||||
Strains Family |
Beta (B.1.351)
|
||||||||
RNA Binding Region |
Not Specified Virus Region
|
||||||||
Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
|
||||||||
Infection Cells | Calu-3 cells (Human lung cancer cell) (CVCL_0609 ) | ||||||||
Cell Originated Tissue | Lung | ||||||||
Infection Time | 24 h | ||||||||
Interaction Score | P-adjust = 0.019 | ||||||||
Method Description | UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS) |