Details of Host Protein
Host Protein General Information (ID: PT0540) | |||||||||
---|---|---|---|---|---|---|---|---|---|
Protein Name |
High mobility group protein B1 (HMGB1)
|
Gene Name |
HMGB1
|
||||||
Host Species |
Homo sapiens
|
Uniprot Entry Name |
HMGB1_HUMAN
|
||||||
Protein Families |
HMGB family
|
||||||||
Subcellular Location |
Nucleus
|
||||||||
External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Multifunctional redox sensitive protein with various roles indifferent cellular compartments. In the nucleus is one of the majorchromatin-associated non-histone proteins and acts as a DNA chaperoneinvolved in replication, transcription, chromatin remodeling, V (D) Jrecombination, DNA repair and genome stability. Proposed to bean universal biosensor for nucleic acids. Promotes host inflammatoryresponse to sterile and infectious signals and is involved in thecoordination and integration of innate and adaptive immune responses. In the cytoplasm functions as sensor and/or chaperone for immunogenicnucleic acids implicating the activation of TLR9-mediated immuneresponses, and mediates autophagy. Acts as danger associated molecularpattern (DAMP) molecule that amplifies immune responses during tissueinjury. Released to the extracellular environment canbind DNA, nucleosomes, IL-1 beta, CXCL12, AGER isoform 2/sRAGE, lipopolysaccharide (LPS) and lipoteichoic acid (LTA), and activatescells through engagement of multiple surface receptors. In theextracellular compartment fully reduced HMGB1 (released by necrosis) acts as a chemokine, disulfide HMGB1 (actively secreted) as a cytokine, and sulfonyl HMGB1 (released from apoptotic cells) promotesimmunological tolerance. Has proangiogdenic activity. May be involved in platelet activation. Binds to phosphatidylserine and phosphatidylethanolamide. Bound to RAGE mediates signaling for neuronal outgrowth. May play a role in accumulation of expandedpolyglutamine (polyQ) proteins such as huntingtin (HTT) or TBP.
[1-7]
Click to Show/Hide
|
||||||||
Related KEGG Pathway | |||||||||
Neutrophil extracellular trap formation | hsa04613 |
Pathway Map ![]() |
|||||||
Base excision repair | hsa03410 |
Pathway Map ![]() |
|||||||
Autophagy - animal | hsa04140 |
Pathway Map ![]() |
|||||||
Necroptosis | hsa04217 |
Pathway Map ![]() |
|||||||
3D Structure |
|
Function of This Protein During Virus Infection | |||||||||
---|---|---|---|---|---|---|---|---|---|
Virus Name | MERS-CoV | Protein Function | Pro-viral | [8] | |||||
Infected Tissue | Kidney | Infection Time | NA | ||||||
Infected Cell | Vero e6 cells (African green monkey kidny cell) | Cellosaurus ID | CVCL_YZ66 | ||||||
Method Description | To detect the role of host protein HMGB1 in viral infection, HMGB1 protein knockout Vero e6 cells were infected with MERS-CoV for several , and the effects on infection was detected through qRT-PCR. | ||||||||
Results | It is reported that Knockout of HMGB1 leads to the reduced SARS-CoV-2 RNA levels compared with control group. | ||||||||
Virus Name | SARS-COV-2 | Protein Function | Pro-viral | [8] | |||||
Infected Tissue | Kidney | Infection Time | NA | ||||||
Infected Cell | Vero e6 cells (African green monkey kidny cell) | Cellosaurus ID | CVCL_YZ66 | ||||||
Method Description | To detect the role of host protein HMGB1 in viral infection, HMGB1 protein knockout Vero e6 cells were infected with SARS-COV-2 for several , and the effects on infection was detected through qRT-PCR. | ||||||||
Results | It is reported that Knockout of HMGB1 leads to the reduced SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
---|---|---|---|---|---|---|---|---|---|
RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 ) | |||||||||
RNA Region Details |
RNA Info
![]() |
[9] | |||||||
Strains Name |
hCoV-19/USA/WA1/2020
|
||||||||
Strains Family |
Alpha (B.1.1.7)
|
||||||||
RNA Binding Region |
Not Specified Virus Region
|
||||||||
Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
|
||||||||
Infection Cells | Huh7.5 cells (Hepatocyte derived cellular carcinoma cell) (CVCL_7927 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | FDR ≤ 0.05 | ||||||||
Method Description | comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Protein Phosphorylation after Virus Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S100
[10] |
![]() |
Potential Drug(s) that Targets This Protein | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Drug Name | DrunkBank ID | Pubchem ID | TTD ID | REF | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chloroquine | DB00608 | 2719 | D09EGZ | [11] |
Protein Sequence Information |
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
Click to Show/Hide
|
---|