Host Protein General Information (ID: PT0543)
  Protein Name
Histone deacetylase complex subunit SAP18 (SAP18)
  Gene Name
SAP18
  Host Species
Homo sapiens
  Uniprot Entry Name
SAP18_HUMAN
  Protein Families
SAP18 family
  Subcellular Location
Nucleus; Cytoplasm
  External Link
NCBI Gene ID
10284
Uniprot ID
O00422
Ensembl ID
ENSG00000150459
HGNC ID
HGNC:10530
  Function in Host
Component of the SIN3-repressing complex. Enhances theability of SIN3-HDAC1-mediated transcriptional repression. Whentethered to the promoter, it can direct the formation of a repressivecomplex to core histone proteins. Auxiliary component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splicejunction on mRNAs. The EJC is a dynamic structure consisting of coreproteins and several peripheral nuclear and cytoplasmic associatedfactors that join the complex only transiently either during EJCassembly or during subsequent mRNA metabolism. Component of the ASAPand PSAP complexes which bind RNA in a sequence-independent manner andare proposed to be recruited to the EJC prior to or during the splicingprocess and to regulate specific excision of introns in specifictranscription subsets. The ASAP complex can inhibit mRNA processingduring in vitro splicing reactions. The ASAP complex promotes apoptosisand is disassembled after induction of apoptosis. Involved in thesplicing modulation of BCL2L1/Bcl-X (and probably other apoptoticgenes); specifically inhibits the formation of proapoptotic isoformssuch as Bcl-X (S); the activity is different from the established EJCassembly and function. [1-4]
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  Related KEGG Pathway
Nucleocytoplasmic transport hsa03013            Pathway Map 
mRNA surveillance pathway hsa03015            Pathway Map 
  3D Structure

 Full List of Virus RNA Interacting with This Protien
            RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [5]
              Strains Name
hCoV-19/England/02/2020
              Strains Family
Beta (B.1.351)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Calu-3 cells (Human lung cancer cell)  (CVCL_0609 )
              Cell Originated Tissue Lung
              Infection Time 24 h
              Interaction Score P-adjust = 0.029
              Method Description UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Sequence Information
MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY
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References
1 Proteins associated with the exon junction complex also control the alternative splicing of apoptotic regulators. Mol Cell Biol. 2012 Mar;32(5):954-67.
2 Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold. RNA. 2010 Dec;16(12):2442-54.
3 ASAP, a novel protein complex involved in RNA processing and apoptosis. Mol Cell Biol. 2003 Apr;23(8):2981-90.
4 Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell. 1997 May 2;89(3):357-64.
5 Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection. Mol Cell. 2021 Jul 1;81(13):2851-2867.e7.