Details of Host Protein
Host Protein General Information (ID: PT0622) | |||||||||
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Protein Name |
Lysosome-associated membrane glycoprotein 2 (LAMP2)
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Gene Name |
LAMP2
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Host Species |
Homo sapiens
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Uniprot Entry Name |
LAMP2_HUMAN
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Protein Families |
LAMP family
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Subcellular Location |
Cell membrane
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External Link | |||||||||
NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Plays an important role in chaperone-mediated autophagy, aprocess that mediates lysosomal degradation of proteins in response tovarious stresses and as part of the normal turnover of proteins with along biological half-live. Functions bybinding target proteins, such as GAPDH and MLLT11, and targeting themfor lysosomal degradation. Plays a role in lysosomal proteindegradation in response to starvation. Required for thefusion of autophagosomes with lysosomes during autophagy. Cells that lack LAMP2 express normal levels ofVAMP8, but fail to accumulate STX17 on autophagosomes, which is themost likely explanation for the lack of fusion between autophagosomesand lysosomes. Required for normal degradation of thecontents of autophagosomes. Required for efficientMHCII-mediated presentation of exogenous antigens via its function inlysosomal protein degradation; antigenic peptides generated byproteases in the endosomal/lysosomal compartment are captured bynascent MHCII subunits. Is not required for efficientMHCII-mediated presentation of endogenous antigens.
[1-5]
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Related KEGG Pathway | |||||||||
Tuberculosis | hsa05152 | Pathway Map | |||||||
Autophagy - animal | hsa04140 | Pathway Map | |||||||
Lysosome | hsa04142 | Pathway Map | |||||||
Phagosome | hsa04145 | Pathway Map | |||||||
3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Pro-viral | [6] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein LAMP2 in viral infection, LAMP2 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of LAMP2 leads to the decreased SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: 5'-UTR (hCoV-19/Wuhan-Hu-1/2019 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [7] | |||||||
Strains Name |
hCoV-19/Wuhan-Hu-1/2019
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
5'-UTR
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | HEK293 Cells (Human embryonic kidney cell) (CVCL_0045 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | Prot score = 119 | ||||||||
Method Description | RNA-protein interaction detection (RaPID) assay; liquid chromatography with tandem mass spectrometry (LC-MS/MS) |