Details of Host Protein
Host Protein General Information (ID: PT0796) | |||||||||
---|---|---|---|---|---|---|---|---|---|
Protein Name |
RIG-I-like receptor 3 (RLR-3)
|
Gene Name |
DHX58
|
||||||
Host Species |
Homo sapiens
|
Uniprot Entry Name |
DHX58_HUMAN
|
||||||
Protein Families |
Helicase family
|
||||||||
EC Number |
3.6.4.13
|
||||||||
Subcellular Location |
Cytoplasm
|
||||||||
External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Acts as a regulator of DDX58/RIG-I and IFIH1/MDA5 mediatedantiviral signaling. Cannot initiate antiviral signaling as it lacksthe CARD domain required for activating MAVS/IPS1-dependent signalingevents. Can have both negative and positive regulatory functionsrelated to DDX58/RIG-I and IFIH1/MDA5 signaling and this role inregulating signaling may be complex and could probably depend oncharacteristics of the infecting virus or target cells, or both. Itsinhibitory action on DDX58/RIG-I signaling may involve the followingmechanisms: competition with DDX58/RIG-I for binding to the viral RNA, binding to DDX58/RIG-I and inhibiting its dimerization and interactionwith MAVS/IPS1, competing with IKBKE in its binding to MAVS/IPS1thereby inhibiting activation of interferon regulatory factor 3 (IRF3). Its positive regulatory role may involve unwinding or strippingnucleoproteins of viral RNA thereby facilitating their recognition byDDX58/RIG-I and IFIH1/MDA5. Involved in the innate immune response tovarious RNA viruses and some DNA viruses such as poxviruses andcoronavirus SARS-CoV-2, and also to the bacterial pathogen Listeriamonocytogenes. Can bind both ssRNA and dsRNA, with ahigher affinity for dsRNA. Shows a preference to 5'-triphosphorylatedRNA, although it can recognize RNA lacking a 5'-triphosphate.
[1-11]
Click to Show/Hide
|
||||||||
Related KEGG Pathway | |||||||||
RIG-I-like receptor signaling pathway | hsa04622 |
Pathway Map ![]() |
|||||||
3D Structure |
|
Function of This Protein During Virus Infection | |||||||||
---|---|---|---|---|---|---|---|---|---|
Virus Name | SARS-COV-2 | Protein Function | Pro-viral | [12] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein DHX58 in viral infection, DHX58 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of DHX58 leads to the decreased SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
---|---|---|---|---|---|---|---|---|---|
RNA Region: ORF10 (hCoV-19/Not Specified Virus Strain ) | |||||||||
RNA Region Details |
RNA Info
![]() |
[13] | |||||||
Strains Name |
hCoV-19/Not Specified Virus Strain
|
||||||||
RNA Binding Region |
ORF10
|
||||||||
Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
|
||||||||
Infection Cells | Calu-3 cells (Human Lung Cancer Cell) (CVCL_0609 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Interaction Score | P-value < 0.05 | ||||||||
Method Description | RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS) |