Details of Host Protein
Host Protein General Information (ID: PT0860) | |||||||||
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Protein Name |
Calgranulin B (S100A9)
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Gene Name |
S100A9
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Host Species |
Homo sapiens
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Uniprot Entry Name |
S10A9_HUMAN
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Protein Families |
S-1.. family
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Subcellular Location |
Secreted
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External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
S100A9 is a calcium- and zinc-binding protein which plays aprominent role in the regulation of inflammatory processes and immuneresponse. Itcan induce neutrophil chemotaxis, adhesion, can increase thebactericidal activity of neutrophils by promoting phagocytosis viaactivation of SYK, PI3K/AKT, and ERK1/2 and can induce degranulation ofneutrophils by a MAPK-dependent mechanism. Predominantly found as calprotectin (S100A8/A9) which has a wide plethora of intra- and extracellularfunctions. Theintracellular functions include: facilitating leukocyte arachidonicacid trafficking and metabolism, modulation of the tubulin-dependentcytoskeleton during migration of phagocytes and activation of theneutrophilic NADPH-oxidase. Activates NADPH-oxidase by facilitating the enzyme complex assembly atthe cell membrane, transferring arachidonic acid, an essentialcofactor, to the enzyme complex and S100A8 contributes to the enzymeassembly by directly binding to NCF2/P67PHOX. The extracellular functions involve pro-inflammatory, antimicrobial, oxidant-scavenging and apoptosis-inducing activities. Its pro-inflammatory activityincludes recruitment of leukocytes, promotion of cytokine and chemokineproduction, and regulation of leukocyte adhesion and migration. Acts as an alarmin or a dangerassociated molecular pattern (DAMP) molecule and stimulates innateimmune cells via binding to pattern recognition receptors such as Toll-like receptor 4 (TLR4) and receptor for advanced glycation endproducts (AGER). Binding to TLR4 and AGER activates the MAP-kinase and NF-kappa-B signaling pathways resulting in the amplificationof the pro-inflammatory cascade. Hasantimicrobial activity towards bacteria and fungi and exerts itsantimicrobial activity probably via chelation of Zn (2+) which isessential for microbial growth. Can induce cell deathvia autophagy and apoptosis and this occurs through the cross-talk ofmitochondria and lysosomes via reactive oxygen species (ROS) and theprocess involves BNIP3. Can regulate neutrophilnumber and apoptosis by an anti-apoptotic effect; regulates cellsurvival via ITGAM/ITGB and TLR4 and a signaling mechanism involvingMEK-ERK. Its role as an oxidant scavenger has aprotective role in preventing exaggerated tissue damage by scavengingoxidants. Can act as a potentamplifier of inflammation in autoimmunity as well as in cancerdevelopment and tumor spread. Has transnitrosylaseactivity; in oxidatively-modified low-densitity lipoprotein (LDL (ox) ) -induced S-nitrosylation of GAPDH on 'Cys-247' proposed to transfer theNO moiety from NOS2/iNOS to GAPDH via its own S-nitrosylated Cys-3. The iNOS-S100A8/A9 transnitrosylase complex isproposed to also direct selective inflammatory stimulus-dependent S-nitrosylation of multiple targets such as ANXA5, EZR, MSN and VIM byrecognizing a [IL]-x-C-x-x-[DE] motif.
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Related KEGG Pathway | |||||||||
IL-17 signaling pathway | hsa04657 | Pathway Map | |||||||
3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [8] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein S100A9 in viral infection, S100A9 protein Knockdown Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of S100A9 increases SARS-CoV-2 RNA levels compared with control group. |
Host Protein - Virus RNA Network | |||||||||
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Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: 3'-UTR (hCoV-19/IPBCAMS-YL01/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [9] | |||||||
Strains Name |
hCoV-19/IPBCAMS-YL01/2020
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
3'-UTR
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Interaction Type | Unlikely to be direct binder | ||||||||
Infection Cells | Huh7.5.1 cells (Hepatocyte derived cellular carcinoma cell) (CVCL_E049 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 30 h | ||||||||
Interaction Score | MIST = 0.628063061 | ||||||||
Method Description | comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS) | ||||||||
RNA Region: Not Specified Virus Region (hCoV-19/Not Specified Virus Strain ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [10] | |||||||
Strains Name |
hCoV-19/Not Specified Virus Strain
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Huh7 cells (liver carcinoma cell) Huh7 cells (liver carcinoma cell) (CVCL_0336 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 24h | ||||||||
Interaction Score | log2FC = 9.62049E+14 | ||||||||
Method Description | RNA antisense purification and quantitative mass spectrometry (RAP-MS); Tandem mass tag (TMT) labelling; liquid chromatography tandem mass spectrometry (LC-MS/MS); Westernblot |