Details of Host Protein
Host Protein General Information (ID: PT0985) | |||||||||
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Protein Name |
RNA-binding protein 7 (RBM7)
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Gene Name |
RBM7
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Host Species |
Homo sapiens
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Uniprot Entry Name |
RBM7_HUMAN
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Subcellular Location |
Nucleus; nucleoplasm Nucleus
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External Link | |||||||||
NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
RNA-binding subunit of the trimeric nuclear exosome targeting (NEXT) complex, a complex that functions as an RNA exosome cofactorthat directs a subset of non-coding short-lived RNAs for exosomaldegradation. NEXT is involved in surveillance andturnover of aberrant transcripts and non-coding RNAs. Binds preferentially polyuridinesequences and associates with newly synthesized RNAs, including pre-mRNAs and short-lived exosome substrates such as promoter upstreamtranscripts (PROMPTs), enhancer RNAs (eRNAs), and 3'-extended productsfrom small nuclear RNAs (snRNAs). Participates in several biologicalprocesses including DNA damage response (DDR) and stress response. During stress response, activationof the p38MAPK-MK2 pathway decreases RBM7-RNA-binding and subsequentlythe RNA exosome degradation activities, thereby modulating the turnoverof non-coding transcriptome. Participates in DNAdamage response (DDR), through its interaction with MEPCE and LARP7, the core subunits of 7SK snRNP complex, that release the positivetranscription elongation factor b (P-TEFb) complex from the 7SK snRNP. In turn, activation of P-TEFb complex induces the transcription of P-TEFb-dependent DDR genes to promote cell viability.
[1-6]
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3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [7] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein RBM7 in viral infection, RBM7 protein knockdown Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of RBM7 increases SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [8] | |||||||
Strains Name |
hCoV-19/England/02/2020
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Calu-3 cells (Human lung cancer cell) (CVCL_0609 ) | ||||||||
Cell Originated Tissue | Lung | ||||||||
Infection Time | 24 h | ||||||||
Interaction Score | P-adjust = 0.004 | ||||||||
Method Description | UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Protein Phosphorylation after Virus Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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S107
[9] |
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S108
[9] |
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S111
[9] |
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S136
[10] |
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S136
[9] |
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S137
[9] |
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S204
[10] |
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S204
[9] |
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T110
[9] |
Protein Sequence Information |
MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDGKWRSSRH
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