Host Protein General Information (ID: PT0986)
  Protein Name
RNA-binding protein 8A (TAF15)
  Gene Name
RBM8A
  Host Species
Homo sapiens
  Uniprot Entry Name
RBM8A_HUMAN
  Protein Families
RBM8A family
  Subcellular Location
Nucleus speckle Cytoplasm
  External Link
NCBI Gene ID
9939
Uniprot ID
Q9Y5S9
Ensembl ID
ENSG00000270647
HGNC ID
HGNC:9905
  Function in Host
Required for pre-mRNA splicing as component of thespliceosome. Core component of thesplicing-dependent multiprotein exon junction complex (EJC) depositedat splice junctions on mRNAs. The EJC is a dynamic structure consistingof core proteins and several peripheral nuclear and cytoplasmicassociated factors that join the complex only transiently either duringEJC assembly or during subsequent mRNA metabolism. The EJC marks theposition of the exon-exon junction in the mature mRNA for the geneexpression machinery and the core components remain bound to splicedmRNAs throughout all stages of mRNA metabolism thereby influencingdownstream processes including nuclear mRNA export, subcellular mRNAlocalization, translation efficiency and nonsense-mediated mRNA decay (NMD). The MAGOH-RBM8A heterodimer inhibits the ATPase activity ofEIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in astable conformation. The MAGOH-RBM8A heterodimer interacts with the EJCkey regulator PYM1 leading to EJC disassembly in the cytoplasm andtranslation enhancement of EJC-bearing spliced mRNAs by recruiting themto the ribosomal 48S preinitiation complex. Its removal fromcytoplasmic mRNAs requires translation initiation from EJC-bearingspliced mRNAs. Associates preferentially with mRNAs produced bysplicing. Does not interact with pre-mRNAs, introns, or mRNAs producedfrom intronless cDNAs. Associates with both nuclear mRNAs and newlyexported cytoplasmic mRNAs. The MAGOH-RBM8A heterodimer is a componentof the nonsense mediated decay (NMD) pathway. Involved in the splicingmodulation of BCL2L1/Bcl-X (and probably other apoptotic genes);specifically inhibits formation of proapoptotic isoforms such as Bcl-X (S); the function is different from the established EJC assembly. [1-8]
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  Related KEGG Pathway
Nucleocytoplasmic transport hsa03013            Pathway Map 
mRNA surveillance pathway hsa03015            Pathway Map 
Spliceosome hsa03040            Pathway Map 
  3D Structure

Host Protein - Virus RNA Network

 Full List of Virus RNA Interacting with This Protien
            RNA Region: ORF1ab (hCoV-19/Wuhan-Hu-1/2019 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [9]
              Strains Name
hCoV-19/Wuhan-Hu-1/2019
              Strains Family
Beta (B.1.351)
              RNA Binding Region
ORF1ab
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Interaction Type Potential binding protein
              Method Description ATtRACT Database; Position Weight Matrices (PWMs); TFBSTools R package
           RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [10]
              Strains Name
hCoV-19/England/02/2020
              Strains Family
Beta (B.1.351)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Calu-3 cells (Human lung cancer cell) Calu-3 cells (Human lung cancer cell)  (CVCL_0609 )
              Cell Originated Tissue Lung
              Infection Time 24 h
              Interaction Score P-adjust = 0.005
              Method Description UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Phosphorylation after Virus Infection
S42 [11]
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S42 [12]
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S56 [11]
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Protein Sequence Information
MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSPDRRRR
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References
1 Structure of a human catalytic step I spliceosome. Science. 2018 Feb 2;359(6375):537-545.
2 An Atomic Structure of the Human Spliceosome. Cell. 2017 May 18;169(5):918-929.e14.
3 Proteins associated with the exon junction complex also control the alternative splicing of apoptotic regulators. Mol Cell Biol. 2012 Mar;32(5):954-67.
4 Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements. Mol Cell. 2005 Oct 7;20(1):65-75.
5 Exon junction complex enhances translation of spliced mRNAs at multiple steps. Biochem Biophys Res Commun. 2009 Jul 3;384(3):334-40.
6 A novel mode of RBD-protein recognition in the Y14-Mago complex. Nat Struct Biol. 2003 Jun;10(6):433-9.
7 Y14 and hUpf3b form an NMD-activating complex. Mol Cell. 2003 Apr;11(4):939-49.
8 Translation is required to remove Y14 from mRNAs in the cytoplasm. Curr Biol. 2002 Jul 9;12(13):1060-7.
9 Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis. Commun Biol. 2021 May 17;4(1):590.
10 Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection. Mol Cell. 2021 Jul 1;81(13):2851-2867.e7.
11 The Global Phosphorylation Landscape of SARS-CoV-2 Infection. Cell. 2020 Aug 6;182(3):685-712.e19.
12 Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. Nature. 2021 Jun;594(7862):246-252.