Details of Host Protein
Host Protein General Information (ID: PT0995) | |||||||||
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Protein Name |
SR-related protein LDC2 (SACM1L)
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Gene Name |
RNPS1
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Host Species |
Homo sapiens
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Uniprot Entry Name |
RNPS1_HUMAN
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Protein Families |
Splicing factor SR family
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Subcellular Location |
Nucleus
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External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Part of pre- and post-splicing multiprotein mRNP complexes. Auxiliary component of the splicing-dependent multiprotein exonjunction complex (EJC) deposited at splice junction on mRNAs. The EJCis a dynamic structure consisting of core proteins and severalperipheral nuclear and cytoplasmic associated factors that join thecomplex only transiently either during EJC assembly or duringsubsequent mRNA metabolism. Component of the ASAP and PSAP complexeswhich bind RNA in a sequence-independent manner and are proposed to berecruited to the EJC prior to or during the splicing process and toregulate specific excision of introns in specific transcriptionsubsets. The ASAP complex can inhibit RNA processing during in vitrosplicing reactions. The ASAP complex promotes apoptosis and isdisassembled after induction of apoptosis. Enhances the formation ofthe ATP-dependent A complex of the spliceosome. Involved in bothconstitutive splicing and, in association with SRP54 and TRA2B/SFRS10, in distinctive modulation of alternative splicing in a substrate-dependent manner. Involved in the splicing modulation of BCL2L1/Bcl-X (and probably other apoptotic genes); specifically inhibits formationof proapoptotic isoforms such as Bcl-X (S); the activity is differentfrom the established EJC assembly and function. Participates in mRNA3'-end cleavage. Involved in UPF2-dependent nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Also mediates increaseof mRNA abundance and translational efficiency. Binds spliced mRNA 20-25 nt upstream of exon-exon junctions.
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Related KEGG Pathway | |||||||||
Nucleocytoplasmic transport | hsa03013 | Pathway Map | |||||||
mRNA surveillance pathway | hsa03015 | Pathway Map | |||||||
3D Structure |
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Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [11] | |||||||
Strains Name |
hCoV-19/England/02/2020
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Calu-3 cells (Human lung cancer cell) (CVCL_0609 ) | ||||||||
Cell Originated Tissue | Lung | ||||||||
Infection Time | 24 h | ||||||||
Interaction Score | P-adjust = 0.013 | ||||||||
Method Description | UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Protein Phosphorylation after Virus Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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S155
[12] |
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S157
[12] |
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S251
[13] |
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S266
[13] |
Protein Sequence Information |
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR
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