Details of Host Protein
Host Protein General Information (ID: PT1072) | |||||||||
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Protein Name |
Sorting nexin-5 (SNX5)
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Gene Name |
SNX5
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Host Species |
Homo sapiens
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Uniprot Entry Name |
SNX5_HUMAN
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Protein Families |
Sorting nexin family
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Subcellular Location |
Plasma membrane; cytoplasm and cytosol
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External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Involved in several stages of intracellular trafficking. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns (3P) ) or phosphatidylinositol 3, 4-bisphosphate (PtdIns (3, 4) P2). Acts in part as component of the retromer membrane-deforming SNX-BAR subcomplex. The SNX-BAR retromer mediates retrogradetransport of cargo proteins from endosomes to the trans-Golgi network (TGN) and is involved in endosome-to-plasma membrane transport forcargo protein recycling. The SNX-BAR subcomplex functions to deform thedonor membrane into a tubular profile called endosome-to-TGN transportcarrier (ETC). Does not have in vitro vesicle-to-membraneremodeling activity. Involved in retrograde transportof lysosomal enzyme receptor IGF2R. May function as link between endosomal transport vesicles and dynactin. Plays a role in the internalization of EGFR after EGFstimulation. Involved in EGFR endosomal sorting anddegradation; the function involves PIP5K1C isoform 3 and is retromer-independent. Together with PIP5K1C isoform 3facilitates HGS interaction with ubiquitinated EGFR, which initiatesEGFR sorting to intraluminal vesicles (ILVs) of the multivesicular bodyfor subsequent lysosomal degradation. Involved in E-cadherinsorting and degradation; inhibits PIP5K1C isoform 3-mediated E-cadherindegradation. Plays a role in macropinocytosis.
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Related KEGG Pathway | |||||||||
Endocytosis | hsa04144 | Pathway Map | |||||||
3D Structure |
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Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [5] | |||||||
Strains Name |
hCoV-19/USA/WA1/2020
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Strains Family |
Alpha (B.1.1.7)
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Huh7.5 cells (Hepatocyte derived cellular carcinoma cell) (CVCL_7927 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | FDR ≤ 0.05 | ||||||||
Method Description | comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS) |