Host Protein General Information (ID: PT1210)
  Protein Name
U8 snoRNA-decapping enzyme (NUDT16)
  Gene Name
NUDT16
  Host Species
Homo sapiens
  Uniprot Entry Name
NUD16_HUMAN
  Protein Families
Nudix hydrolase family
  EC Number
3.6.1.62; 3.6.1.64
  Subcellular Location
Nucleus; nucleoplasm Nucleus; nucleolus Cytoplasm
  External Link
NCBI Gene ID
131870
Uniprot ID
Q96DE0
Ensembl ID
ENSG00000198585
HGNC ID
HGNC:26442
  Function in Host
RNA-binding and decapping enzyme that catalyzes the cleavageof the cap structure of snoRNAs and mRNAs in a metal-dependent manner. Part of the U8 snoRNP complex that is required for the accumulation ofmature 5. 8S and 28S rRNA. Has diphosphatase activity and removes m7Gand/or m227G caps from U8 snoRNA and leaves a 5'monophosphate on theRNA. Catalyzes also the cleavage of the cap structure on mRNAs. Doesnot hydrolyze cap analog structures like 7-methylguanosine nucleosidetriphosphate (m7GpppG). Also hydrolysis m7G- and m227G U3-capped RNAsbut with less efficiencies. Has broad substrate specificity withmanganese or cobalt as cofactor and can act on various RNA species. Binds to the U8 snoRNA; metal is not required for RNA-binding. May playa role in the regulation of snoRNAs and mRNAs degradation. Acts also asa phosphatase; hydrolyzes the non-canonical purine nucleotides inosinediphosphate (IDP) and deoxyinosine diphosphate (dITP) as well asguanosine diphosphate (GDP), deoxyguanosine diphosphate (dGDP), xanthine diphosphate (XDP), inosine triphosphate (ITP) and deoxyinosinetriphosphate (ITP) to their respective monophosphate derivatives anddoes not distinguish between the deoxy- and ribose forms. The order of activity withdifferent substrates is IDP > dIDP >> GDP = dGDP > XDP = ITP = dITP. Binds strongly to GTP, ITP and XTP. Participates inthe hydrolysis of dIDP/IDP and probably excludes non-canonical purinesfrom RNA and DNA precursor pools, thus preventing their incorporationinto RNA and DNA and avoiding chromosomal lesions. Exhibits decapping activity towards NAD-capped RNAs and FAD-capped RNAs. Exhibits decapping activity towards dpCoA-cappedRNAs in vitro. [1-3]
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  Related KEGG Pathway
RNA degradation hsa03018            Pathway Map 
Metabolic pathways hsa01100            Pathway Map 
Nucleotide metabolism hsa01232            Pathway Map 
Purine metabolism hsa00230            Pathway Map 
RNA degradation hsa03018            Pathway Map 
Metabolic pathways hsa01100            Pathway Map 
Nucleotide metabolism hsa01232            Pathway Map 
Purine metabolism hsa00230            Pathway Map 
  3D Structure

Function of This Protein During Virus Infection
Virus NameSARS-COV-2 Protein Function Pro-viral [4]
Infected TissueLung Infection Time7-9 Days
Infected CellCalu-3 Cells (Human epithelial cell line) Cellosaurus IDCVCL_0609 
Method DescriptionTo detect the role of host protein NUDT16 in viral infection, NUDT16 protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen.
ResultsIt is reported that knockout of NUDT16 leads to the decreased SARS-CoV-2 RNA levels compared with control group.

 Full List of Virus RNA Interacting with This Protien
            RNA Region: ORF10 (hCoV-19/Not Specified Virus Strain )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [5]
              Strains Name
hCoV-19/Not Specified Virus Strain
              RNA Binding Region
ORF10
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7 cells (human liver cell line)  (CVCL_0336 )
              Cell Originated Tissue Liver
              Interaction Score P-value < 0.05
              Method Description RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Sequence Information
MAGARRLELGEALALGSGWRHACHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPTFLENSFIGSAREQLLEALQDLGLLQSGSISGLKIPAHH
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References
1 Mammalian Nudix proteins cleave nucleotide metabolite caps on RNAs. Nucleic Acids Res. 2020 Jul 9;48(12):6788-6798.
2 Structural Basis for the Specificity of Human NUDT16 and Its Regulation by Inosine Monophosphate. PLoS One. 2015 Jun 29;10(6):e0131507.
3 NUDT16 is a (deoxy)inosine diphosphatase, and its deficiency induces accumulation of single-strand breaks in nuclear DNA and growth arrest. Nucleic Acids Res. 2010 Aug;38(14):4834-43.
4 Genome-wide CRISPR screens identify GATA6 as a proviral host factor for SARS-CoV-2 via modulation of ACE2. Nat Commun. 2022 Apr 25;13(1):2237.
5 Mapping the host protein interactome of non-coding regions in SARS-CoV-2 genome. bioRxiv. 2021 Jun; DOI:10.1101/2021.06.19.449092.