Details of Host Protein
Host Protein General Information (ID: PT1215) | |||||||||
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Protein Name |
Ubiquitin-40S ribosomal protein S27a (RPS27A)
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Gene Name |
RPS27A
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Host Species |
Homo sapiens
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Uniprot Entry Name |
RS27A_HUMAN
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Protein Families |
Ubiquitin family; Eukaryotic ribosomal protein eS31 family
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Subcellular Location |
Cytoplasm Nucleus
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External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Exists either covalently attached to anotherprotein, or free (unanchored). When covalently bound, it is conjugatedto target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of theubiquitin (polyubiquitin chains) or a linear polymer linked via theinitiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have differentfunctions depending on the Lys residue of the ubiquitin that is linked:Lys-6-linked may be involved in DNA repair; Lys-11-linked is involvedin ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in proteotoxic stressresponse and cell cycle; Lys-33-linked is involved in kinasemodification; Lys-48-linked is involved in protein degradation via theproteasome; Lys-63-linked is involved in endocytosis, DNA-damageresponses as well as in signaling processes leading to activation ofthe transcription factor NF-kappa-B. Linear polymer chains formed viaattachment by the initiator Met lead to cell signaling. Ubiquitin isusually conjugated to Lys residues of target proteins, however, in rarecases, conjugation to Cys or Ser residues has been observed. Whenpolyubiquitin is free (unanchored-polyubiquitin), it also has distinctroles, such as in activation of protein kinases, and in signaling.
[1-3]
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Related KEGG Pathway | |||||||||
Coronavirus disease - COVID-19 | hsa05171 | Pathway Map | |||||||
Kaposi sarcoma-associated herpesvirus infection | hsa05167 | Pathway Map | |||||||
Mitophagy - animal | hsa04137 | Pathway Map | |||||||
Coronavirus disease - COVID-19 | hsa05171 | Pathway Map | |||||||
Kaposi sarcoma-associated herpesvirus infection | hsa05167 | Pathway Map | |||||||
Ribosome | hsa03010 | Pathway Map | |||||||
Shigellosis | hsa05131 | Pathway Map | |||||||
Ubiquitin mediated proteolysis | hsa04120 | Pathway Map | |||||||
Parkinson disease | hsa05012 | Pathway Map | |||||||
Pathways of neurodegeneration - multiple diseases | hsa05022 | Pathway Map | |||||||
Ribosome | hsa03010 | Pathway Map | |||||||
Shigellosis | hsa05131 | Pathway Map | |||||||
Ubiquitin mediated proteolysis | hsa04120 | Pathway Map | |||||||
Mitophagy - animal | hsa04137 | Pathway Map | |||||||
Parkinson disease | hsa05012 | Pathway Map | |||||||
Pathways of neurodegeneration - multiple diseases | hsa05022 | Pathway Map | |||||||
3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Pro-viral | [4] | |||||
Infected Tissue | Lung | Infection Time | 7-9 Days | ||||||
Infected Cell | Calu-3 Cells (Human epithelial cell line) | Cellosaurus ID | CVCL_0609 | ||||||
Method Description | To detect the role of host protein RPS27A in viral infection, RPS27A protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen. | ||||||||
Results | It is reported that knockout of RPS27A leads to the decreased SARS-CoV-2 RNA levels compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [5] | |||||||
Strains Name |
hCoV-19/USA/WA1/2020
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Strains Family |
Alpha (B.1.1.7)
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Huh7.5 cells (Hepatocyte derived cellular carcinoma cell) (CVCL_7927 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | FDR ≤ 0.05 | ||||||||
Method Description | comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Protein Phosphorylation after Virus Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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S65
[6] |
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T66
[6] |
Protein Sequence Information |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
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