Details of Host Protein
Host Protein General Information (ID: PT1234) | |||||||||
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Protein Name |
Vesicle protein sorting 35 (VPS35)
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Gene Name |
VPS35
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Host Species |
Homo sapiens
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Uniprot Entry Name |
VPS35_HUMAN
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Protein Families |
VPS35 family
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Subcellular Location |
Cytoplasm
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External Link | |||||||||
NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component ofretromer or respective retromer complex variants acting to preventmissorting of selected transmembrane cargo proteins into the lysosomaldegradation pathway. The recruitment of the CSC to the endosomalmembrane involves RAB7A and SNX3. The CSC seems to associate with thecytoplasmic domain of cargo proteins predominantly via VPS35; however, these interactions seem to be of low affinity and retromer SNX proteinsmay also contribute to cargo selectivity thus questioning the classicalfunction of the CSC. The SNX-BAR retromer mediates retrograde transportof cargo proteins from endosomes to the trans-Golgi network (TGN) andis involved in endosome-to-plasma membrane transport for cargo proteinrecycling. The SNX3-retromer mediates the retrograde endosome-to-TGNtransport of WLS distinct from the SNX-BAR retromer pathway. The SNX27-retromer is believed to be involved inendosome-to-plasma membrane trafficking and recycling of a broadspectrum of cargo proteins. The CSC seems to act as recruitment hub forother proteins, such as the WASH complex and TBC1D5. Required for retrograde transport of lysosomal enzyme receptor IGF2Rand SLC11A2. Required to regulate transcytosis of the polymericimmunoglobulin receptor (pIgR-pIgA). Required for endosomal localization of WASHC2C. Mediates the association of the CSCwith the WASH complex via WASHC2. Required for the endosomal localization of TBC1D5.
[1-6]
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Related KEGG Pathway | |||||||||
Endocytosis | hsa04144 | Pathway Map | |||||||
Endocytosis | hsa04144 | Pathway Map | |||||||
3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Pro-viral | [7] | |||||
Infected Tissue | Lung | Infection Time | 24 h | ||||||
Infected Cell | A549 Cells (Adenocarcinomic Human alveolar basal epithelial cells) | Cellosaurus ID | CVCL_H249 | ||||||
Method Description | To detect the role of host protein VPS35 in viral infection, VPS35 protein knockout A549 Cells were infected with SARS-COV-2 for 24 h , and the effects on infection was detected through qRT-PCR. | ||||||||
Results | It is reported that Knockout and Knockdown of VPS35 leads to the reduced the relative infection compared with control group. |
Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: 5'-UTR (hCoV-19/Wuhan-Hu-1/2019 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [8] | |||||||
Strains Name |
hCoV-19/Wuhan-Hu-1/2019
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
5'-UTR
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | HEK293 Cells (Human embryonic kidney cell) (CVCL_0045 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | Prot score = 19 | ||||||||
Method Description | RNA-protein interaction detection (RaPID) assay; liquid chromatography with tandem mass spectrometry (LC-MS/MS) |