Details of Host Protein
Host Protein General Information (ID: PT1255) | |||||||||
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Protein Name |
X-ray repair cross-complementing 5 (Ku80)
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Gene Name |
XRCC5
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Host Species |
Homo sapiens
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Uniprot Entry Name |
XRCC5_HUMAN
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Protein Families |
Ku8. family
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EC Number |
3.6.4.-
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Subcellular Location |
Nucleus; nucleolus Chromosome
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External Link | |||||||||
NCBI Gene ID | |||||||||
Uniprot ID | |||||||||
Ensembl ID | |||||||||
HGNC ID | |||||||||
Function in Host |
Single-stranded DNA-dependent ATP-dependent helicase thatplays a key role in DNA non-homologous end joining (NHEJ) by recruitingDNA-PK to DNA. Required for double-strand break repair and V (D) Jrecombination. Also has a role in chromosome translocation. TheDNA helicase II complex binds preferentially to fork-like ends ofdouble-stranded DNA in a cell cycle-dependent manner. It works in the 3'-5' direction. During NHEJ, the XRCC5-XRRC6 dimer performs therecognition step: it recognizes and binds to the broken ends of the DNAand protects them from further resection. Binding to DNA maybe mediated by XRCC6. The XRCC5-XRRC6 dimer acts as regulatory subunit ofthe DNA-dependent protein kinase complex DNA-PK by increasing theaffinity of the catalytic subunit PRKDC to DNA by 100-fold. The XRCC5-XRRC6 dimer is probably involved instabilizing broken DNA ends and bringing them together. The assembly of theDNA-PK complex to DNA ends is required for the NHEJ ligation step. TheXRCC5-XRRC6 dimer probably also acts as a 5'-deoxyribose-5-phosphatelyase (5'-dRP lyase), by catalyzing the beta-elimination of the 5'deoxyribose-5-phosphate at an abasic site near double-strand breaks. XRCC5 probably acts as the catalytic subunit of 5'-dRP activity, and allows to 'clean' the termini of abasic sites, aclass of nucleotide damage commonly associated with strand breaks, before such broken ends can be joined. The XRCC5-XRRC6 dimer together with APEX1 acts as a negative regulator oftranscription. In association with NAA15, the XRCC5-XRRC6 dimer binds to the osteocalcin promoter and activates osteocalcinexpression. As part of the DNA-PK complex, involvedin the early steps of ribosome assembly by promoting the processing ofprecursor rRNA into mature 18S rRNA in the small-subunit processome. Binding to U3 small nucleolar RNA, recruits PRKDCand XRCC5/Ku86 to the small-subunit processome. Playsa role in the regulation of DNA virus-mediated innate immune responseby assembling into the HDP-RNP complex, a complex that serves as aplatform for IRF3 phosphorylation and subsequent innate immune responseactivation through the cGAS-STING pathway.
[1-4]
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Related KEGG Pathway | |||||||||
Non-homologous end-joining | hsa03450 | Pathway Map | |||||||
Non-homologous end-joining | hsa03450 | Pathway Map | |||||||
3D Structure |
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Function of This Protein During Virus Infection | |||||||||
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Virus Name | SARS-COV-2 | Protein Function | Anti-viral | [5] | |||||
Infected Tissue | Lung | Infection Time | 24 h | ||||||
Infected Cell | A549 Cells (Adenocarcinomic Human alveolar basal epithelial cell) | Cellosaurus ID | CVCL_H249 | ||||||
Method Description | To detect the role of host protein XRCC5 in viral infection, XRCC5 A549 Cells SARS-COV-2 24 h qRT-PCR. | ||||||||
Results | It is reported that knockdown of XRCC5 increases the percent of infected cells 150% compared with control group. |
Host Protein - Virus RNA Network | |||||||||
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Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/Not Specified Virus Strain ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [6] | |||||||
Strains Name |
hCoV-19/Not Specified Virus Strain
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Huh7 cells (liver carcinoma cell) (CVCL_0336 ) | ||||||||
Cell Originated Tissue | Liver | ||||||||
Infection Time | 24h | ||||||||
Interaction Score | log2FC = 1.68599E+14 | ||||||||
Method Description | RNA antisense purification and quantitative mass spectrometry (RAP-MS); Tandem mass tag (TMT) labelling; liquid chromatography tandem mass spectrometry (LC-MS/MS); Westernblot | ||||||||
RNA Region: Not Specified Virus Region (hCoV-19/France/IDF-220-95/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [5] | |||||||
Strains Name |
hCoV-19/France/IDF-220-95/2020
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Interaction Type | Direct interaction | ||||||||
Infection Cells | HEK293 Cells (Human embryonic kidney cell) HEK293 Cells (Human embryonic kidney cell) (CVCL_0045 ) | ||||||||
Cell Originated Tissue | Kidney | ||||||||
Infection Time | 48 h | ||||||||
Interaction Score | SAINT score ≥ 0.79 | ||||||||
Method Description | comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Protein Phosphorylation after Virus Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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S191
[7] |
Protein Sequence Information |
MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLRKLCVFKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTLKKEDIQKETVYCLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIVRYAYDKRANPQVGVAFPHIKHNYECLVYVQLPFMEDLRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAKKLKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDKPSGDTAAVFEEGGDVDDLLDMI
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