Host Protein General Information (ID: PT1262)
  Protein Name
YTH domain-containing family protein 3 (YTHDF3)
  Gene Name
YTHDF3
  Host Species
Homo sapiens
  Uniprot Entry Name
YTHD3_HUMAN
  Protein Families
YTHDF family
  Subcellular Location
Cytoplasm; cytosol Cytoplasm; P-body Cytoplasm; Stress granule
  External Link
NCBI Gene ID
253943
Uniprot ID
Q7Z739
Ensembl ID
ENSG00000185728
HGNC ID
HGNC:26465
  Function in Host
Specifically recognizes and binds N6-methyladenosine (m6A) -containing RNAs, and regulates their stability. M6A is amodification present at internal sites of mRNAs and some non-codingRNAs and plays a role in mRNA stability and processing. Acts as a regulator of mRNA stability by promotingdegradation of m6A-containing mRNAs via interaction with the CCR4-NOTcomplex or PAN3. The YTHDF paralogs (YTHDF1, YTHDF2and YTHDF3) share m6A-containing mRNAs targets and act redundantly tomediate mRNA degradation and cellular differentiation. Acts as a negative regulator of typeI interferon response by down-regulating interferon-stimulated genes (ISGs) expression: acts by binding to FOXO3 mRNAs. Binds to FOXO3 mRNAs independently of METTL3-mediated m6A modification. Can also act as a regulator of mRNA stability incooperation with YTHDF2 by binding to m6A-containing mRNA and promotingtheir degradation. Recognizes and binds m6A-containing circular RNAs (circRNAs); circRNAs are generated throughback-splicing of pre-mRNAs, a non-canonical splicing process promotedby dsRNA structures across circularizing exons. Promotes formation of phase-separated membraneless compartments, suchas P-bodies or stress granules, by undergoing liquid-liquid phaseseparation upon binding to mRNAs containing multiple m6A-modifiedresidues: polymethylated mRNAs act as a multivalent scaffold for thebinding of YTHDF proteins, juxtaposing their disordered regions andthereby leading to phase separation. The resulting mRNA-YTHDF complexes then partitioninto different endogenous phase-separated membraneless compartments, such as P-bodies, stress granules or neuronal RNA granules. May also recognize and bind N1-methyladenosine (m1A) -containing mRNAs: inhibits trophoblast invasion by binding tom1A-methylated transcripts of IGF1R, promoting their degradation. [1-6]
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  3D Structure

 Full List of Virus RNA Interacting with This Protien
            RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [7]
              Strains Name
hCoV-19/England/02/2020
              Strains Family
Beta (B.1.351)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Calu-3 cells (Human lung cancer cell)  (CVCL_0609 )
              Cell Originated Tissue Lung
              Infection Time 24 h
              Interaction Score P-adjust = 0.012
              Method Description UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Phosphorylation after Virus Infection
S385 [8]
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S387 [8]
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S388 [8]
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Protein Sequence Information
MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNRGAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ
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References
1 A Unified Model for the Function of YTHDF Proteins in Regulating m 6 A-Modified mRNA. Cell. 2020 Jun 25;181(7):1582-1595.e18.
2 Extensive translation of circular RNAs driven by N 6-methyladenosine. Cell Res. 2017 May;27(5):626-641.
3 Cytoplasmic m 6 A reader YTHDF3 promotes mRNA translation. Cell Res. 2017 Mar;27(3):444-447.
4 YTHDF3 facilitates translation and decay of N 6-methyladenosine-modified RNA. Cell Res. 2017 Mar;27(3):315-328.
5 N6-methyladenosine-dependent regulation of messenger RNA stability. Nature. 2014 Jan 2;505(7481):117-20.
6 Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature. 2012 Apr 29;485(7397):201-6.
7 Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection. Mol Cell. 2021 Jul 1;81(13):2851-2867.e7.
8 Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. Nature. 2021 Jun;594(7862):246-252.