Details of Host Protein
Host Protein General Information (ID: PT1262) | |||||||||
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Protein Name |
YTH domain-containing family protein 3 (YTHDF3)
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Gene Name |
YTHDF3
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Host Species |
Homo sapiens
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Uniprot Entry Name |
YTHD3_HUMAN
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Protein Families |
YTHDF family
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Subcellular Location |
Cytoplasm; cytosol Cytoplasm; P-body Cytoplasm; Stress granule
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NCBI Gene ID | |||||||||
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Ensembl ID | |||||||||
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Function in Host |
Specifically recognizes and binds N6-methyladenosine (m6A) -containing RNAs, and regulates their stability. M6A is amodification present at internal sites of mRNAs and some non-codingRNAs and plays a role in mRNA stability and processing. Acts as a regulator of mRNA stability by promotingdegradation of m6A-containing mRNAs via interaction with the CCR4-NOTcomplex or PAN3. The YTHDF paralogs (YTHDF1, YTHDF2and YTHDF3) share m6A-containing mRNAs targets and act redundantly tomediate mRNA degradation and cellular differentiation. Acts as a negative regulator of typeI interferon response by down-regulating interferon-stimulated genes (ISGs) expression: acts by binding to FOXO3 mRNAs. Binds to FOXO3 mRNAs independently of METTL3-mediated m6A modification. Can also act as a regulator of mRNA stability incooperation with YTHDF2 by binding to m6A-containing mRNA and promotingtheir degradation. Recognizes and binds m6A-containing circular RNAs (circRNAs); circRNAs are generated throughback-splicing of pre-mRNAs, a non-canonical splicing process promotedby dsRNA structures across circularizing exons. Promotes formation of phase-separated membraneless compartments, suchas P-bodies or stress granules, by undergoing liquid-liquid phaseseparation upon binding to mRNAs containing multiple m6A-modifiedresidues: polymethylated mRNAs act as a multivalent scaffold for thebinding of YTHDF proteins, juxtaposing their disordered regions andthereby leading to phase separation. The resulting mRNA-YTHDF complexes then partitioninto different endogenous phase-separated membraneless compartments, such as P-bodies, stress granules or neuronal RNA granules. May also recognize and bind N1-methyladenosine (m1A) -containing mRNAs: inhibits trophoblast invasion by binding tom1A-methylated transcripts of IGF1R, promoting their degradation.
[1-6]
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3D Structure |
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Full List of Virus RNA Interacting with This Protien | |||||||||
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RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 ) | |||||||||
RNA Region Details | RNA Info Click to show the detail information of this RNA binding region | [7] | |||||||
Strains Name |
hCoV-19/England/02/2020
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Strains Family |
Beta (B.1.351)
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RNA Binding Region |
Not Specified Virus Region
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Virus Name |
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
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Infection Cells | Calu-3 cells (Human lung cancer cell) (CVCL_0609 ) | ||||||||
Cell Originated Tissue | Lung | ||||||||
Infection Time | 24 h | ||||||||
Interaction Score | P-adjust = 0.012 | ||||||||
Method Description | UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS) |
Differential Gene Expression During SARS-COV-2 Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Protein Phosphorylation after Virus Infection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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S385
[8] |
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S387
[8] |
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S388
[8] |
Protein Sequence Information |
MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNRGAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ
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