Host Protein General Information (ID: PT0291)
  Protein Name
ASF/SF2-associated protein p32 (C1QBP)
  Gene Name
C1QBP
  Host Species
Homo sapiens
  Uniprot Entry Name
C1QBP_HUMAN
  Protein Families
MAM33 family
  Subcellular Location
Mitochondrion matrix Nucleus; nucleolus Cell membrane
  External Link
NCBI Gene ID
708
Uniprot ID
Q07021
Ensembl ID
ENSG00000108561
HGNC ID
HGNC:1243
  Function in Host
Is believed to be a multifunctional and multicompartmentalprotein involved in inflammation and infection processes, ribosomebiogenesis, protein synthesis in mitochondria, regulation of apoptosis, transcriptional regulation and pre-mRNA splicing. At the cell surfaceis thought to act as an endothelial receptor for plasma proteins of thecomplement and kallikrein-kinin cascades. Putative receptor for C1q;specifically binds to the globular 'heads' of C1q thus inhibiting C1;may perform the receptor function through a complex with C1qR/CD93. Incomplex with cytokeratin-1/KRT1 is a high affinity receptor forkininogen-1/HMWK. Can also bind other plasma proteins, such ascoagulation factor XII leading to its autoactivation. May function tobind initially fluid kininogen-1 to the cell membrane. The secretedform may enhance both extrinsic and intrinsic coagulation pathways. Itis postulated that the cell surface form requires docking withtransmembrane proteins for downstream signaling which might be specificfor a cell-type or response. By acting as C1q receptor is involved inchemotaxis of immature dendritic cells and neutrophils and is proposedto signal through CD209/DC-SIGN on immature dendritic cells, throughintegrin alpha-4/beta-1 during trophoblast invasion of the decidua, andthrough integrin beta-1 during endothelial cell adhesion and spreading. Signaling involved in inhibition of innate immune response isimplicating the PI3K-AKT/PKB pathway. Required for protein synthesis inmitochondria. In mitochondrial translation may beinvolved in formation of functional 55S mitoribosomes; the functionseems to involve its RNA-binding activity. May be involved in thenucleolar ribosome maturation process; the function may involve theexchange of FBL for RRP1 in the association with pre-ribosomeparticles. Involved in regulation of RNA splicing by inhibiting theRNA-binding capacity of SRSF1 and its phosphorylation. Is required forthe nuclear translocation of splicing factor U2AF1L4. Involved inregulation of CDKN2A- and HRK-mediated apoptosis. Stabilizesmitochondrial CDKN2A isoform smARF. May be involved in regulation ofFOXC1 transcriptional activity and NFY/CCAAT-binding factor complex-mediated transcription. May play a role in antibacterial defense as itcan bind to cell surface hyaluronan and inhibit Streptococcuspneumoniae hyaluronate lyase. May be involved in modulation of theimmune response; ligation by HCV core protein is resulting insuppression of interleukin-12 production in monocyte-derived dendriticcells. Involved in regulation of antiviral response by inhibitingDDX58- and IFIH1-mediated signaling pathways probably involving itsassociation with MAVS after viral infection. [1-20]
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  3D Structure

Function of This Protein During Virus Infection
Virus NameSARS-COV-2 Protein Function Anti-viral [21]
Infected TissueLung Infection Time7-9 Days
Infected CellCalu-3 Cells (Human epithelial cell line) Cellosaurus IDCVCL_0609 
Method DescriptionTo detect the role of host protein C1QBP in viral infection, C1QBP protein knockout Calu-3 Cells were infected with SARS-COV-2 for 7 - 9 Days , and the effects on infection was detected through CRISPR-based genome-wide gene-knockout screen.
ResultsIt is reported that knockout of C1QBP increases SARS-CoV-2 RNA levels compared with control group.

Host Protein - Virus RNA Network

 Full List of Virus RNA Interacting with This Protien
            RNA Region: ORF10 (hCoV-19/Not Specified Virus Strain )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [22]
              Strains Name
hCoV-19/Not Specified Virus Strain
              RNA Binding Region
ORF10
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7 cells (human liver cell line)  (CVCL_0336 )
              Cell Originated Tissue Liver
              Interaction Score P-value < 0.05
              Method Description RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS)
           RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [23]
              Strains Name
hCoV-19/USA/WA1/2020
              Strains Family
Alpha (B.1.1.7)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7.5 cells (Hepatocyte derived cellular carcinoma cell) Huh7.5 cells (Hepatocyte derived cellular carcinoma cell)  (CVCL_7927 )
              Cell Originated Tissue Liver
              Infection Time 48 h
              Interaction Score FDR ≤ 0.05
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Sequence Information
MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLRPRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ
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References
1 Isolation and characterization of the kininogen-binding protein p33 from endothelial cells Identity with the gC1q receptor. J Biol Chem. 1996 May 31;271(22):13040-7.
2 Biallelic C1QBP Mutations Cause Severe Neonatal-, Childhood-, or Later-Onset Cardiomyopathy Associated with Combined Respiratory-Chain Deficiencies. Am J Hum Genet. 2017 Oct 5;101(4):525-538.
3 DC-SIGN, C1q, and gC1qR form a trimolecular receptor complex on the surface of monocyte-derived immature dendritic cells. Blood. 2012 Aug 9;120(6):1228-36.
4 Interaction of high-molecular-weight kininogen with endothelial cell binding proteins suPAR, gC1qR and cytokeratin 1 determined by surface plasmon resonance (BiaCore). Thromb Haemost. 2011 Jun;105(6):1053-9.
5 Splicing factor 2-associated protein p32 participates in ribosome biogenesis by regulating the binding of Nop52 and fibrillarin to preribosome particles. Mol Cell Proteomics. 2011 Aug;10(8):M110.006148.
6 An alternative role of C1q in cell migration and tissue remodeling: contribution to trophoblast invasion and placental development. J Immunol. 2010 Oct 1;185(7):4420-9.
7 Evidence for inhibitory interaction of hyaluronan-binding protein 1 (HABP1/p32/gC1qR) with Streptococcus pneumoniae hyaluronidase. J Biol Chem. 2009 Feb 6;284(6):3897-905.
8 Inhibition of RIG-I and MDA5-dependent antiviral response by gC1qR at mitochondria. Proc Natl Acad Sci USA. 2009 Feb 3;106(5):1530-5.
9 Human p32 is a novel FOXC1-interacting protein that regulates FOXC1 transcriptional activity in ocular cells. Invest Ophthalmol Vis Sci. 2008 Dec;49(12):5243-9.
10 HCV core protein interaction with gC1q receptor inhibits Th1 differentiation of CD4+ T cells via suppression of dendritic cell IL-12 production. J Leukoc Biol. 2007 Dec;82(6):1407-19.
11 Chemotaxis of human monocyte-derived dendritic cells to complement component C1q is mediated by the receptors gC1qR and cC1qR. Mol Immunol. 2006 Mar;43(9):1402-7.
12 gC1q receptor ligation selectively down-regulates human IL-12 production through activation of the phosphoinositide 3-kinase pathway. J Immunol. 2005 Oct 1;175(7):4706-14.
13 Human p32, interacts with B subunit of the CCAAT-binding factor, CBF/NF-Y, and inhibits CBF-mediated transcription activation in vitro. Nucleic Acids Res. 2004 Jul 8;32(12):3632-41.
14 Cooperation of C1q receptors and integrins in C1q-mediated endothelial cell adhesion and spreading. J Immunol. 2002 Mar 1;168(5):2441-8.
15 Interaction between complement receptor gC1qR and hepatitis C virus core protein inhibits T-lymphocyte proliferation. J Clin Invest. 2000 Nov;106(10):1239-49.
16 Staphylococcus aureus protein A recognizes platelet gC1qR/p33: a novel mechanism for staphylococcal interactions with platelets. Infect Immun. 2000 Apr;68(4):2061-8.
17 Cytokeratin 1 and gC1qR mediate high molecular weight kininogen binding to endothelial cells. Clin Immunol. 1999 Sep;92(3):246-55.
18 The splicing factor-associated protein, p32, regulates RNA splicing by inhibiting ASF/SF2 RNA binding and phosphorylation. EMBO J. 1999 Feb 15;18(4):1014-24.
19 C1q-mediated chemotaxis by human neutrophils: involvement of gClqR and G-protein signalling mechanisms. Biochem J. 1998 Feb 15;330 ( Pt 1)(Pt 1):247-54.
20 Identification of the zinc-dependent endothelial cell binding protein for high molecular weight kininogen and factor XII: identity with the receptor that binds to the globular &quot;heads&quot; of C1q (gC1q-R). Proc Natl Acad Sci USA. 1996 Aug 6;93(16):8552-7.
21 Genome-wide CRISPR screens identify GATA6 as a proviral host factor for SARS-CoV-2 via modulation of ACE2. Nat Commun. 2022 Apr 25;13(1):2237.
22 Mapping the host protein interactome of non-coding regions in SARS-CoV-2 genome. bioRxiv. 2021 Jun; DOI:10.1101/2021.06.19.449092.
23 Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions. Cell. 2021 Apr 29;184(9):2394-2411.e16.