Host Protein General Information (ID: PT0718)
  Protein Name
Rotamase A (PPIA)
  Gene Name
PPIA
  Host Species
Homo sapiens
  Uniprot Entry Name
PPIA_HUMAN
  Protein Families
Cyclophilin-type PPIase family
  EC Number
5.2.1.8
  Subcellular Location
Cytoplasm Secreted Nucleus
  External Link
NCBI Gene ID
5478
Uniprot ID
P62937
Ensembl ID
ENSG00000196262
HGNC ID
HGNC:9253
  Function in Host
Catalyzes the cis-trans isomerization of proline imidicpeptide bonds in oligopeptides. Exerts a strongchemotactic effect on leukocytes partly through activation of one ofits membrane receptors BSG/CD147, initiating a signaling cascade thatculminates in MAPK/ERK activation. Activates endothelial cells (ECs) in a pro-inflammatory manner bystimulating activation of NF-kappa-B and ERK, JNK and p38 MAP-kinasesand by inducing expression of adhesion molecules including SELE andVCAM1. Induces apoptosis in ECs by promoting theFOXO1-dependent expression of CCL2 and BCL2L11 which are involved in ECchemotaxis and apoptosis. In response to oxidativestress, initiates proapoptotic and antiapoptotic signaling in ECs viaactivation of NF-kappa-B and AKT1 and up-regulation of antiapoptoticprotein BCL2. Negatively regulates MAP3K5/ASK1 kinaseactivity, autophosphorylation and oxidative stress-induced apoptosismediated by MAP3K5/ASK1. Necessary for the assemblyof TARDBP in heterogeneous nuclear ribonucleoprotein (hnRNP) complexesand regulates TARDBP binding to RNA UG repeats and TARDBP-dependentexpression of HDAC6, ATG7 and VCP which are involved in clearance ofprotein aggregates. Plays an important role inplatelet activation and aggregation. Regulates calciummobilization and integrin ITGA2B:ITGB3 bidirectional signaling viaincreased ROS production as well as by facilitating the interactionbetween integrin and the cell cytoskeleton. Bindsheparan sulfate glycosaminoglycans. Inhibitsreplication of influenza A virus (IAV). InhibitsITCH/AIP4-mediated ubiquitination of matrix protein 1 (M1) of IAV byimpairing the interaction of ITCH/AIP4 with M1, followed by thesuppression of the nuclear export of M1, and finally reduction of thereplication of IAV. [1-8]
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  Related KEGG Pathway
Viral life cycle - HIV-1 hsa03250            Pathway Map 
Necroptosis hsa04217            Pathway Map 
  3D Structure

Function of This Protein During Virus Infection
Virus NameSARS-COV-2 Protein Function Anti-viral [9]
Infected TissueLung Infection Time24 h
Infected CellA549 Cells (Adenocarcinomic Human alveolar basal epithelial cells) Cellosaurus IDCVCL_H249 
Method DescriptionTo detect the role of host protein PPIA in viral infection, PPIA protein knockout A549 Cells were infected with SARS-COV-2 for 24 h , and the effects on infection was detected through qRT-PCR.
ResultsIt is reported that Knockdown of PPIA increases viral particles production compared with control group.

Host Protein - Virus RNA Network

 Full List of Virus RNA Interacting with This Protien
            RNA Region: 3'-UTR (hCoV-19/IPBCAMS-YL01/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [10]
              Strains Name
hCoV-19/IPBCAMS-YL01/2020
              Strains Family
Beta (B.1.351)
              RNA Binding Region
3'-UTR
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Interaction Type Unlikely to be direct binder
              Infection Cells Huh7.5.1 cells (Hepatocyte derived cellular carcinoma cell)  (CVCL_E049 )
              Cell Originated Tissue Liver
              Infection Time 30 h
              Interaction Score MIST = 0.990602192
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)
           RNA Region: Not Specified Virus Region (hCoV-19/Not Specified Virus Strain )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [11]
              Strains Name
hCoV-19/Not Specified Virus Strain
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7 cells (liver carcinoma cell) Huh7 cells (liver carcinoma cell)  (CVCL_0336 )
              Cell Originated Tissue Liver
              Infection Time 24h
              Interaction Score log2FC = 8.76745E+13
              Method Description RNA antisense purification and quantitative mass spectrometry (RAP-MS); Tandem mass tag (TMT) labelling; liquid chromatography tandem mass spectrometry (LC-MS/MS); Westernblot
           RNA Region: Not Specified Virus Region (hCoV-19/France/IDF-220-95/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [9]
              Strains Name
hCoV-19/France/IDF-220-95/2020
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Interaction Type Direct interaction
              Infection Cells HEK293 Cells (Human embryonic kidney cell) HEK293 Cells (Human embryonic kidney cell)  (CVCL_0045 )
              Cell Originated Tissue Kidney
              Infection Time 48 h
              Interaction Score SAINT score ≥ 0.79
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)
           RNA Region: Not Specified Virus Region (hCoV-19/England/02/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [12]
              Strains Name
hCoV-19/England/02/2020
              Strains Family
Beta (B.1.351)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Calu-3 cells (Human lung cancer cell) Calu-3 cells (Human lung cancer cell)  (CVCL_0609 )
              Cell Originated Tissue Lung
              Infection Time 24 h
              Interaction Score P-adjust = 0.012
              Method Description UV protein-RNA crosslinking; RNA interactome capture (cRIC); RNA antisense purification coupled with mass spectrometry (RAP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Phosphorylation after Virus Infection
S147 [13]
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S51 [13]
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Potential Drug(s) that Targets This Protein
Drug Name DrunkBank ID Pubchem ID TTD ID REF
CYCLOSPORINE DB00091  5284373  D0O3YF  [14], [15], [10]
Indinavir DB00224  5362440  D0V7CF  [10]
Ribavirin DB00811  37542  D0H3WI  [10]
Zidovudine DB00495  35370  D01XYJ  [10]

Protein Sequence Information
MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
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References
1 Cyclophilin A-FoxO1 signaling pathway in endothelial cell apoptosis. Cell Signal. 2019 Sep;61:57-65.
2 Peptidylprolyl isomerase A governs TARDBP function and assembly in heterogeneous nuclear ribonucleoprotein complexes. Brain. 2015 Apr;138(Pt 4):974-91.
3 Cyclophilin A (CyPA) induces chemotaxis independent of its peptidylprolyl cis-trans isomerase activity: direct binding between CyPA and the ectodomain of CD147. J Biol Chem. 2011 Mar 11;286(10):8197-8203.
4 Cyclophilin A interacts with domain II of hepatitis C virus NS5A and stimulates RNA binding in an isomerase-dependent manner. J Virol. 2011 Jul;85(14):7460-4.
5 Structural and biochemical characterization of the human cyclophilin family of peptidyl-prolyl isomerases. PLoS Biol. 2010 Jul 27;8(7):e1000439.
6 Cyclophilin A is a proinflammatory cytokine that activates endothelial cells. Arterioscler Thromb Vasc Biol. 2004 Jul;24(7):1186-91.
7 Active site residues of cyclophilin A are crucial for its signaling activity via CD147. J Biol Chem. 2002 Jun 21;277(25):22959-65.
8 Human and Escherichia coli cyclophilins: sensitivity to inhibition by the immunosuppressant cyclosporin A correlates with a specific tryptophan residue. Biochemistry. 1991 Mar 5;30(9):2306-10.
9 Characterization and functional interrogation of the SARS-CoV-2 RNA interactome. Cell Rep. 2022 Apr 26;39(4):110744.
10 Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2. Cell Res. 2022 Jan;32(1):9-23.
11 The SARS-CoV-2 RNA-protein interactome in infected human cells. Nat Microbiol. 2021 Mar;6(3):339-353.
12 Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection. Mol Cell. 2021 Jul 1;81(13):2851-2867.e7.
13 The Global Phosphorylation Landscape of SARS-CoV-2 Infection. Cell. 2020 Aug 6;182(3):685-712.e19.
14 Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions. Cell. 2021 Apr 29;184(9):2394-2411.e16.
15 The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors. PLoS Pathog. 2011 Oct;7(10):e1002331.