Host Protein General Information (ID: PT0778)
  Protein Name
Pre-mRNA-processing factor 19 (PRPF19)
  Gene Name
PRPF19
  Host Species
Homo sapiens
  Uniprot Entry Name
PRP19_HUMAN
  Protein Families
WD repeat PRP19 family
  EC Number
2.3.2.27
  Subcellular Location
Nucleus; nucleoplasm Cytoplasm; cytoskeleton
  External Link
NCBI Gene ID
27339
Uniprot ID
Q9UMS4
Ensembl ID
ENSG00000110107
HGNC ID
HGNC:17896
  Function in Host
Ubiquitin-protein ligase which is a core component of severalcomplexes mainly involved pre-mRNA splicing and DNA repair. Requiredfor pre-mRNA splicing as component of the spliceosome. Core component of the PRP19C/Prp19 complex/NTC/Nineteen complex whichis part of the spliceosome and participates in its assembly, itsremodeling and is required for its activity. During assembly of thespliceosome, mediates 'Lys-63'-linked polyubiquitination of the U4spliceosomal protein PRPF3. Ubiquitination of PRPF3 allows itsrecognition by the U5 component PRPF8 and stabilizes the U4/U5/U6 tri-snRNP spliceosomal complex. Recruited to RNApolymerase II C-terminal domain (CTD) and the pre-mRNA, it may alsocouple the transcriptional and spliceosomal machineries. The XAB2 complex, which contains PRPF19, is alsoinvolved in pre-mRNA splicing, transcription and transcription-coupledrepair. Beside its role in pre-mRNA splicing PRPF19, as part of the PRP19-CDC5L complex, plays a role in the DNA damageresponse/DDR. It is recruited to the sites of DNA damage by the RPAcomplex where PRPF19 directly ubiquitinates RPA1 and RPA2. 'Lys-63'-linked polyubiquitination of the RPA complex allows the recruitment ofthe ATR-ATRIP complex and the activation of ATR, a master regulator ofthe DNA damage response. May also play a role in DNAdouble-strand break (DSB) repair by recruiting the repair factor SETMARto altered DNA. As part of the PSO4 complex may alsobe involved in the DNA interstrand cross-links/ICLs repair process. In addition, may also mediate 'Lys-48'-linkedpolyubiquitination of substrates and play a role in proteasomaldegradation. May play a role in the biogenesis oflipid droplets. May play a role in neuraldifferentiation possibly through its function as part of thespliceosome. [1-8]
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  Related KEGG Pathway
Ubiquitin mediated proteolysis hsa04120            Pathway Map 
Spliceosome hsa03040            Pathway Map 
  3D Structure

Host Protein - Virus RNA Network

 Full List of Virus RNA Interacting with This Protien
            RNA Region: 3'-UTR (hCoV-19/Not Specified Virus Strain )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [9]
              Strains Name
hCoV-19/Not Specified Virus Strain
              RNA Binding Region
3'-UTR
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7 cells (human liver cell line); Calu-3 cells (human lung cancer cell line)  (CVCL_0336;CVCL_0609 )
              Cell Originated Tissue Liver; Lung
              Interaction Score P-value < 0.05
              Method Description RNA pull-down assays; liquid chromatography with tandem mass spectrometry (LC-MS/MS); Wilcoxon test; MS2 affinity purification coupled with liquid chromatography-mass spectrometry (MAMS)
           RNA Region: Not Specified Virus Region (hCoV-19/USA/WA1/2020 )
              RNA Region Details RNA Info Click to show the detail information of this RNA binding region [10]
              Strains Name
hCoV-19/USA/WA1/2020
              Strains Family
Alpha (B.1.1.7)
              RNA Binding Region
Not Specified Virus Region
              Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
              Infection Cells Huh7.5 cells (Hepatocyte derived cellular carcinoma cell) Huh7.5 cells (Hepatocyte derived cellular carcinoma cell)  (CVCL_7927 )
              Cell Originated Tissue Liver
              Infection Time 48 h
              Interaction Score FDR ≤ 0.05
              Method Description comprehensive identification of RNA-binding proteins by massspectrometry (ChIRP-MS)

Differential Gene Expression During SARS-COV-2 Infection
GEO Accession: GSE152641
Sample Type: Blood
Samples Details: Healthy Control: 24; COVID-19: 62
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE162835
Sample Type: Nasopharyngeal Swabs
Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3
Platform: GPL24676 Illumina NovaSeq 6000
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GEO Accession: GSE175779
Sample Type: Human Bronchial Epithelial Cells
Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)
Platform: GPL18573 Illumina NextSeq 500
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Protein Sequence Information
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHPIRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
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References
1 A human postcatalytic spliceosome structure reveals essential roles of metazoan factors for exon ligation. Science. 2019 Feb 15;363(6428):710-714.
2 Structure of the human activated spliceosome in three conformational states. Cell Res. 2018 Mar;28(3):307-322.
3 Structure of a human catalytic step I spliceosome. Science. 2018 Feb 2;359(6375):537-545.
4 An Atomic Structure of the Human Spliceosome. Cell. 2017 May 18;169(5):918-929.e14.
5 Cryo-EM structure of a human spliceosome activated for step 2 of splicing. Nature. 2017 Feb 16;542(7641):318-323.
6 The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex. Genes Dev. 2011 May 1;25(9):972-83.
7 The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome. Genes Dev. 2010 Jul 1;24(13):1434-47.
8 Isolation of XAB2 complex involved in pre-mRNA splicing, transcription, and transcription-coupled repair. J Biol Chem. 2008 Jan 11;283(2):940-50.
9 Mapping the host protein interactome of non-coding regions in SARS-CoV-2 genome. bioRxiv. 2021 Jun; DOI:10.1101/2021.06.19.449092.
10 Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions. Cell. 2021 Apr 29;184(9):2394-2411.e16.