Details of Host Protein

Host Protein General Information (ID: PT0512)
Protein Name	Helicase-like transcription factor (HLTF)	Gene Name	HLTF
Host Species	Homo sapiens	Uniprot Entry Name	HLTF_HUMAN
Protein Families	SNF2/RAD54 helicase family
EC Number	2.3.2.27; 3.6.4.-
Subcellular Location	Nucleus; cytoplasm and cytosol
External Link
	NCBI Gene ID	6596
	Uniprot ID	Q14527
	Ensembl ID	ENSG00000071794
	HGNC ID	HGNC:11099
Function in Host	Has both helicase and E3 ubiquitin ligase activities. Possesses intrinsic ATP-dependent nucleosome-remodeling activity; Thisactivity may be required for transcriptional activation or repressionof specific target promoters. These may include theSERPINE1 and HIV-1 promoters and the SV40 enhancer, to which thisprotein can bind directly. Plays a role in error-free postreplicationrepair (PRR) of damaged DNA and maintains genomic stability throughacting as a ubiquitin ligase for 'Lys-63'-linked polyubiquitination ofchromatin-bound PCNA. [1-6] Click to Show/Hide
3D Structure	PDB ID: 2MZN FASTA Download 2D PNG Download PDB File Download

Host Protein - Virus RNA Network

Network Download

Full List of Virus RNA Interacting with This Protien
*RNA Region: 5'-UTR (hCoV-19/Wuhan-Hu-1/2019 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[7]
Strains Name	hCoV-19/Wuhan-Hu-1/2019
Strains Family	Beta (B.1.351)
RNA Binding Region	5'-UTR
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Infection Cells	HEK293 Cells (Human embryonic kidney cell) (CVCL_0045 )
Cell Originated Tissue	Liver
Infection Time	48 h
Interaction Score	Prot score = 23
Method Description	RNA-protein interaction detection (RaPID) assay; liquid chromatography with tandem mass spectrometry (LC-MS/MS)
*RNA Region: ORF1ab (hCoV-19/Zimbabwe/CERI-KRISP-K034087/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Zimbabwe/CERI-KRISP-K034087/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Zambia/ZMB-88673/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Zambia/ZMB-88673/2021
Strains Family	Beta (B.1.351)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Wuhan/WHUH020/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Wuhan/WHUH020/2020
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Wuhan/HBCDC-HB-04/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Wuhan/HBCDC-HB-04/2020
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Venezuela/Bol285/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Venezuela/Bol285/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/USA/CA-CZB-14678/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/USA/CA-CZB-14678/2020
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Switzerland/TI-EOC-902_25839324/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Switzerland/TI-EOC-902_25839324/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Suriname/SR-342/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Suriname/SR-342/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Scotland/QEUH-13A999F/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Scotland/QEUH-13A999F/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Scotland/EDB14267/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Scotland/EDB14267/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Philippines/PH-PGC-104159/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Philippines/PH-PGC-104159/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Peru/CAL-INS-5458/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Peru/CAL-INS-5458/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/NewZealand/20CV0676/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/NewZealand/20CV0676/2020
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Myanmar/DSMRC-065/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Myanmar/DSMRC-065/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Malaysia/MGI_GS0622/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Malaysia/MGI_GS0622/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Malawi/KRISP-K010154/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Malawi/KRISP-K010154/2020
Strains Family	Beta (B.1.351)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Guam/GU-CDC-2-3906081-/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Guam/GU-CDC-2-3906081-/2021
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Ethiopia/ILRI_COVM02835/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Ethiopia/ILRI_COVM02835/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Eswatini/N2779/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Eswatini/N2779/2020
Strains Family	Beta (B.1.351)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/QEUH-1269F5E/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/QEUH-1269F5E/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/MILK-F88D46/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-F88D46/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/MILK-F88C2B/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-F88C2B/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/MILK-1205929/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-1205929/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/MILK-11F02FA/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-11F02FA/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/LOND-12F444A/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/LOND-12F444A/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/CAMC-13B6BB7/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/CAMC-13B6BB7/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/England/CAMC-12DF946/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/CAMC-12DF946/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/ElSalvador/INC-LNSP-153/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/ElSalvador/INC-LNSP-153/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Chile/AT-59206/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Chile/AT-59206/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Canada/UN-276648/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Canada/UN-276648/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Bonaire/BQ-RIVM-101067/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bonaire/BQ-RIVM-101067/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Bolivia/CH-INLASA-27102/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bolivia/CH-INLASA-27102/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Bangladesh/CHRF-GSB17-117/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bangladesh/CHRF-GSB17-117/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Australia/SA60463/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Australia/SA60463/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Argentina/PAIS-E0546/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/PAIS-E0546/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Argentina/INEI113521/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI113521/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Argentina/INEI106123/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI106123/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF1ab (hCoV-19/Argentina/INEI104133/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI104133/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF1ab
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF7a (hCoV-19/Kazakhstan/1872/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Kazakhstan/1872/2021
Strains Family	Delta (B.1.617.2 and AY lineages)
RNA Binding Region	ORF7a
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF8 (hCoV-19/Switzerland/TI-EOC-902_25839324/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Switzerland/TI-EOC-902_25839324/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF8
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF8 (hCoV-19/Bolivia/CH-INLASA-27102/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bolivia/CH-INLASA-27102/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF8
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF8 (hCoV-19/Argentina/INEI113521/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI113521/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF8
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: ORF8 (hCoV-19/Argentina/INEI106123/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI106123/2021
Strains Family	Gamma (P.1)
RNA Binding Region	ORF8
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Zimbabwe/CERI-KRISP-K034087/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Zimbabwe/CERI-KRISP-K034087/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Zambia/ZMB-88673/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Zambia/ZMB-88673/2021
Strains Family	Beta (B.1.351)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Wuhan/WHUH020/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Wuhan/WHUH020/2020
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Wuhan/HBCDC-HB-04/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Wuhan/HBCDC-HB-04/2020
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Wuhan-Hu-1/2019 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Wuhan-Hu-1/2019
Strains Family	Beta (B.1.351)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Venezuela/Bol285/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Venezuela/Bol285/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/USA/CA-CZB-14678/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/USA/CA-CZB-14678/2020
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Switzerland/TI-EOC-902_25839324/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Switzerland/TI-EOC-902_25839324/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Suriname/SR-342/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Suriname/SR-342/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Scotland/QEUH-13A999F/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Scotland/QEUH-13A999F/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Scotland/EDB14267/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Scotland/EDB14267/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Philippines/PH-PGC-104159/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Philippines/PH-PGC-104159/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Peru/CAL-INS-5458/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Peru/CAL-INS-5458/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/NewZealand/20CV0676/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/NewZealand/20CV0676/2020
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Namibia/N17380/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Namibia/N17380/2021
Strains Family	Delta (B.1.617.2 and AY lineages)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Namibia/CERI-KRISP-K022530/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Namibia/CERI-KRISP-K022530/2021
Strains Family	Delta (B.1.617.2 and AY lineages)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Myanmar/DSMRC-065/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Myanmar/DSMRC-065/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Malaysia/MGI_GS0622/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Malaysia/MGI_GS0622/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Malawi/KRISP-K010154/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Malawi/KRISP-K010154/2020
Strains Family	Beta (B.1.351)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Kyrgyzstan/ChVir26576_10/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Kyrgyzstan/ChVir26576_10/2021
Strains Family	Delta (B.1.617.2 and AY lineages)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Kazakhstan/1872/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Kazakhstan/1872/2021
Strains Family	Delta (B.1.617.2 and AY lineages)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Iraq/Thi-Qar-1/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Iraq/Thi-Qar-1/2021
Strains Family	Delta (B.1.617.2 and AY lineages)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Guam/GU-CDC-2-3906081-/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Guam/GU-CDC-2-3906081-/2021
Strains Family	Epsilon (B.1.427; B.1.429)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Ethiopia/ILRI_COVM02835/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Ethiopia/ILRI_COVM02835/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Eswatini/N2779/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Eswatini/N2779/2020
Strains Family	Beta (B.1.351)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/QEUH-1269F5E/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/QEUH-1269F5E/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/MILK-F88D46/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-F88D46/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/MILK-F88C2B/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-F88C2B/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/MILK-1205929/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-1205929/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/MILK-11F02FA/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/MILK-11F02FA/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/LOND-12F444A/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/LOND-12F444A/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/CAMC-13B6BB7/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/CAMC-13B6BB7/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/England/CAMC-12DF946/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/England/CAMC-12DF946/2021
Strains Family	Alpha (B.1.1.7)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/ElSalvador/INC-LNSP-153/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/ElSalvador/INC-LNSP-153/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Chile/AT-59206/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Chile/AT-59206/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Canada/UN-276648/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Canada/UN-276648/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Bonaire/BQ-RIVM-101067/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bonaire/BQ-RIVM-101067/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Bangladesh/CHRF-GSB17-117/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bangladesh/CHRF-GSB17-117/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Australia/SA60463/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Australia/SA60463/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Argentina/PAIS-E0546/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/PAIS-E0546/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Argentina/INEI113521/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI113521/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Argentina/INEI106123/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI106123/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: N region (hCoV-19/Argentina/INEI104133/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Argentina/INEI104133/2021
Strains Family	Gamma (P.1)
RNA Binding Region	N region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Zimbabwe/CERI-KRISP-K034087/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Zimbabwe/CERI-KRISP-K034087/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Wuhan/HBCDC-HB-04/2020 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Wuhan/HBCDC-HB-04/2020
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Philippines/PH-PGC-104159/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Philippines/PH-PGC-104159/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Myanmar/DSMRC-065/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Myanmar/DSMRC-065/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Malaysia/MGI_GS0622/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Malaysia/MGI_GS0622/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Ethiopia/ILRI_COVM02835/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Ethiopia/ILRI_COVM02835/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/ElSalvador/INC-LNSP-153/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/ElSalvador/INC-LNSP-153/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Chile/AT-59206/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Chile/AT-59206/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Canada/UN-276648/2021 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Canada/UN-276648/2021
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Bonaire/BQ-RIVM-101067/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bonaire/BQ-RIVM-101067/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Bangladesh/CHRF-GSB17-117/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Bangladesh/CHRF-GSB17-117/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: S region (hCoV-19/Australia/SA60463/2022 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-19/Australia/SA60463/2022
Strains Family	Omicron (B.1.1.529; BA.1; BA.1.1; BA.2; BA.3; BA.4 ; BA.5)
RNA Binding Region	S region
Virus Name	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: Not Specified Virus Region (hCoV-SARS/Manitoba/2003 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-SARS/Manitoba/2003
Strains Family	Beta
RNA Binding Region	Not Specified Virus Region
Virus Name	Severe acute respiratory syndrome-related coronavirus (HCoV-SARS)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: Not Specified Virus Region (hCov-OC43/VR-759 Quebec/2019 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCov-OC43/VR-759 Quebec/2019
Strains Family	Beta
RNA Binding Region	Not Specified Virus Region
Virus Name	Human coronavirus OC43 (HCov-OC43)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: Not Specified Virus Region (hCov-NL63/Amsterdam/2004 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCov-NL63/Amsterdam/2004
Strains Family	Alpha
RNA Binding Region	Not Specified Virus Region
Virus Name	Human Coronavirus NL63 (HCov-NL63)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: Not Specified Virus Region (hCov-MERS/Jeddah/2012 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCov-MERS/Jeddah/2012
Strains Family	Beta
RNA Binding Region	Not Specified Virus Region
Virus Name	Middle East respiratory syndrome-related coronavirus (HCov-MERS)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: Not Specified Virus Region (hCoV-HKU1/Hong Kong/2004 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCoV-HKU1/Hong Kong/2004
Strains Family	Beta
RNA Binding Region	Not Specified Virus Region
Virus Name	Human coronavirus HKU1 (HCoV-HKU1)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm
*RNA Region: Not Specified Virus Region (hCov-229E/Würzburg/2000 )*
RNA Region Details	RNA Info Click to show the detail information of this RNA binding region	[8]
Strains Name	hCov-229E/Würzburg/2000
Strains Family	Alpha
RNA Binding Region	Not Specified Virus Region
Virus Name	Human coronavirus 229E (HCov-229E)
Interaction Type	Potential binding protein
Infection Cells	HepG2 cells (hepatocellular carcinoma cell line) HepG2 cells (hepatocellular carcinoma cell line) (CVCL_0027 )
Cell Originated Tissue	Liver
Method Description	ENCODE project database; Pysster model; DeepRiPe (Section 3.6; 3.7; 3.8; 3.9); ClustalO (72) algorithm

Differential Gene Expression During SARS-COV-2 Infection

GEO Accession: GSE152641

Sample Type: Blood

Samples Details: Healthy Control: 24; COVID-19: 62

Platform: GPL24676 Illumina NovaSeq 6000

PNG Download

GEO Accession: GSE162835

Sample Type: Nasopharyngeal Swabs

Samples Details: COVID-19 (Mild Symptoms): 37; COVID-19 (Moderate Symptoms): 10; COVID-19 (Severe Symptoms): 3

Platform: GPL24676 Illumina NovaSeq 6000

PNG Download

GEO Accession: GSE175779

Sample Type: Human Bronchial Epithelial Cells

Samples Details: Healthy Control: 4 (0, 24, 48, 72 and 96 h); COVID-19: 4 (24, 48, 72 and 96 h)

Platform: GPL18573 Illumina NextSeq 500

PNG Download

Protein Phosphorylation after Virus Infection
S382 [9] PNG Download

Protein Sequence Information
MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGFNLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL Click to Show/Hide

References
1	Human HLTF functions as a ubiquitin ligase for proliferating cell nuclear antigen polyubiquitination. Proc Natl Acad Sci USA. 2008 Mar 11;105(10):3768-73.
2	Polyubiquitination of proliferating cell nuclear antigen by HLTF and SHPRH prevents genomic instability from stalled replication forks. Proc Natl Acad Sci USA. 2008 Aug 26;105(34):12411-6.
3	Functional interactions between Sp1 or Sp3 and the helicase-like transcription factor mediate basal expression from the human plasminogen activator inhibitor-1 gene. J Biol Chem. 1999 Jul 9;274(28):19573-80.
4	Developmental regulation of Zbu1, a DNA-binding member of the SWI2/SNF2 family. Dev Biol. 1997 Mar 15;183(2):166-82.
5	Characterization of a helicase-like transcription factor involved in the expression of the human plasminogen activator inhibitor-1 gene. DNA Cell Biol. 1996 Jun;15(6):429-42.
6	Cloning of an SNF2/SWI2-related protein that binds specifically to the SPH motifs of the SV40 enhancer and to the HIV-1 promoter. J Biol Chem. 1995 Mar 3;270(9):4575-87.
7	RNA-Protein Interaction Analysis of SARS-CoV-2 5 and 3 Untranslated Regions Reveals a Role of Lysosome-Associated Membrane Protein-2a during Viral Infection. mSystems. 2021 Aug 31;6(4):e0064321.
8	Computational Mapping of the Human-SARS-CoV-2 Protein-RNA Interactome. bioRxiv. 2021 Dec; DOI:.org/10.1101/2021.12.22.472458.
9	The Global Phosphorylation Landscape of SARS-CoV-2 Infection. Cell. 2020 Aug 6;182(3):685-712.e19.

Details of Host Protein

Cite CovInter

About CovInter

Correspondence